Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0481 ATGTTCGCAGTTGCAGTGCCGAAGACGACGATGACTCCGTTATTCTCATCTCCAAAGCTCCCTTCACTACTCTACAAGTCCTCCTCTCTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCATCGCCGAGATCGTTGTCCAGTCCGAGGAATCTTCATGTTTCTGCATCGTCGTCGCCGTCGTCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATTGGATTTGAATTTGGAATATTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATAGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGCCAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAGCGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGACGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGCGGAGCTTGTTGCGTGACTGCATTGATACGGAACGGAAATCTGGCAGTCTCCAACGTTGGCGATTGTCGTGCTGTGTTGAGCAGAAAGGGAAAAGCGGAAGCCCTAACTTCGGATCACAGGGCGTGCAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGAGGTTATGTAGATTGTTGCGGTGGTGGATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACGAGAGTGATGAAGATCGAGGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGTAGAGGCAGTATGCGGCGTAGAGATAACGAAGAAGAAACCAAATCCGGCATTAATAATGTCGGCCTGCAAACAGTTGGCGACTTTGTCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATCAAACTAAGTTCCCTTTTTCATTCCTCAACCTCAATTAATCATCATCATTAA 1137 48.46 MFAVAVPKTTMTPLFSSPKLPSLLYKSSSLNSSSSSSSSSSSSPRSLSSPRNLHVSASSSPSSVDTVLKRKRPARIDVPPSMPSIGFEFGIFETPEVMEEEGEGYSVYCKRGRRRISAIEDRFSATVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRMSENVIDQVARRTESELEEAIKDGYLTTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIVEAVCGVEITKKKPNPALIMSACKQLATLSTSRGSIDDTTVMIIKLSSLFHSSTSINHHH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5469494 5471415 + CmPI595203_07g004810.1 Cmu07g0481 420032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0481 378 PANTHER PROTEIN PHOSPHATASE 96 362 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu07g0481 378 MobiDBLite consensus disorder prediction 1 20 - -
Cmu07g0481 378 MobiDBLite consensus disorder prediction 26 66 - -
Cmu07g0481 378 Pfam Protein phosphatase 2C 126 355 IPR001932 -
Cmu07g0481 378 ProSiteProfiles PPM-type phosphatase domain profile. 104 364 IPR001932 -
Cmu07g0481 378 MobiDBLite consensus disorder prediction 26 75 - -
Cmu07g0481 378 CDD PP2Cc 104 364 IPR001932 -
Cmu07g0481 378 SMART PP2C_4 97 362 IPR001932 -
Cmu07g0481 378 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169(InterPro)
Cmu07g0481 378 Gene3D - 98 370 IPR036457 -
Cmu07g0481 378 SUPERFAMILY PP2C-like 104 365 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0481 Cmu-Chr7:5469494 Cmu08g1699 Cmu-Chr8:28501960 9.20E-59 dispersed
Cmu11g0873 Cmu-Chr11:11452378 Cmu07g0481 Cmu-Chr7:5469494 3.30E-69 transposed
Cmu03g0687 Cmu-Chr3:1053201 Cmu07g0481 Cmu-Chr7:5469494 1.40E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0481 K17506 - csv:101208170 546.584