Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0544 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAACGTCTCCAAGATGCTCATGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTTGCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTCGCCGTGCCACCACCACCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG 735 45.17 MSKERERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAVPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYFVTTSSTAHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6422346 6423596 + CmPI595203_07g005440.1 Cmu07g0544 420095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0544 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 169 - -
Cmu07g0544 244 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cmu07g0544 244 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cmu07g0544 244 MobiDBLite consensus disorder prediction 182 199 - -
Cmu07g0544 244 Coils Coil 128 155 - -
Cmu07g0544 244 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0544 Cmu-Chr7:6422346 Cmu10g2152 Cmu-Chr10:27552403 5.60E-33 dispersed
Cmu11g0584 Cmu-Chr11:6419537 Cmu07g0544 Cmu-Chr7:6422346 4.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6500 PF03195 LOB 2.20E-40 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0544 - - - 0.0