Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0561 ATGGCTTTTTACTCACCATTTTCCTCTCTCTTCCTTCTTCCTTTCTTCTTCATCTATTTTCCCTTCGCTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGCACAGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGTCTTCCTGGAACCATTAGAGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACATTTCGACATGGCGGAACCTGCCTTTCTTCAGATCGCACAGTACCGTGCTGGAATCGTCCCTGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGTCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAGGATGGCAAGCCATGTCTAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTGAGTGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA 759 49.67 MAFYSPFSSLFLLPFFFIYFPFAFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6844854 6847862 - CmPI595203_07g005610.1 Cmu07g0561 420112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0561 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Cmu07g0561 252 Gene3D - 160 252 IPR036749 -
Cmu07g0561 252 CDD DPBB_EXPA_N 29 155 - -
Cmu07g0561 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Cmu07g0561 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Cmu07g0561 252 PANTHER EXPANSIN-A15 22 252 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 FunFam Expansin 22 156 - -
Cmu07g0561 252 SMART dpbb_1 65 150 IPR007112 -
Cmu07g0561 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cmu07g0561 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cmu07g0561 252 FunFam Expansin 160 252 - -
Cmu07g0561 252 Gene3D - 22 156 IPR036908 -
Cmu07g0561 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cmu07g0561 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cmu07g0561 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2002 Cmu-Chr2:33783402 Cmu07g0561 Cmu-Chr7:6844854 7.10E-103 dispersed
Cmu04g0854 Cmu-Chr4:23047064 Cmu07g0561 Cmu-Chr7:6844854 5.30E-106 dispersed
Cmu07g0379 Cmu-Chr7:3820281 Cmu07g0561 Cmu-Chr7:6844854 8.30E-104 dispersed
Cmu07g0561 Cmu-Chr7:6844854 Cmu11g0982 Cmu-Chr11:15107540 6.70E-106 dispersed
Cmu10g1491 Cmu-Chr10:9923702 Cmu07g0561 Cmu-Chr7:6844854 6.80E-68 transposed
Cmu11g0574 Cmu-Chr11:6332320 Cmu07g0561 Cmu-Chr7:6844854 6.90E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0561 - - - 0.0