Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0611 ATGGAGGAAATAAATATCTCAAAGGCTCTGTCCAATCACTTCCATTTTCAGGTTCTGACGGAAGAAAGAAAGCGGCGAATGCCAATGGCGAAAAAGGATGATGAACCGGAGCTTCGGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCACGACGATGAACACCTCGGTAATGAAGAAGAAGAAGAGCAGGTGAGCGAGCTTCCATTGAAACCGGGGCTTTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCTGATGCTCTGGAGCCCGATTTTCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACTGGATACCGTGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGTCACCCTCTGGTAGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAACAGGTTACGGCTAGCACCCATACATGATGATGATGGGACTGTAACACACATAATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTCTTCAAAGAAAATTGTGCTATAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCGTTTGGCCACCATAAAGAAATCTGTAGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAACATTTTATCACGCTTAACACCACGAGATGTTGCATCTGTCGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGCCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTGACAGTTGGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCGGCAGGTAATCGACTTGTATTATTTGGTGGAGAAGGAGTCAATATGCAACCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTCAGTGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTCGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCGCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCGAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGATAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACACCCCCATCTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGGCACTTACGCTTACGATCAGGCGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCAGTGGAGGCAACTTGAGTGCAGTGCATTCACTGGCATTGGCGGTCAGAGTGCTGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCTTGTGGAAGGATTATCATTTTCGGTGGCTCCATTGCTGGGCTACATTCACCTTCTCAACTTTTCCTTTTGGATCCAGCCGAGGAGAAGCCGTCATGGAGGATTCTCAACGTTCCTGGACAACCACCTAAATTTGCTTGGGGCCACAGTACTTGTGTGGTTGGAGGTACAAGAGTTTTGGTATTGGGCGGCCACACCGGGGAAGAATGGATACTAAATGAATTACACGAACTCTGCTTGGCTAGCAGGCAAGATTCAGATCTTTGA 1959 46.96 MEEINISKALSNHFHFQVLTEERKRRMPMAKKDDEPELRSSGKRLKCSKHDDEHLGNEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKENCAIKYDLSGKSAHLIDQSPFGHHKEICRILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8095038 8097910 + CmPI595203_07g006110.1 Cmu07g0611 420162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0611 652 Pfam Kelch motif 557 604 IPR011498 GO:0005515(InterPro)
Cmu07g0611 652 SUPERFAMILY Kelch motif 552 642 IPR015915 GO:0005515(InterPro)
Cmu07g0611 652 Gene3D - 535 650 IPR015915 GO:0005515(InterPro)
Cmu07g0611 652 SMART pac_2 154 195 IPR001610 -
Cmu07g0611 652 FunFam Putative LOV domain-containing protein 516 648 - -
Cmu07g0611 652 MobiDBLite consensus disorder prediction 22 65 - -
Cmu07g0611 652 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 190 IPR035965 -
Cmu07g0611 652 Gene3D PAS domain 77 201 - -
Cmu07g0611 652 Pfam Galactose oxidase, central domain 333 383 - -
Cmu07g0611 652 Gene3D - 233 283 - -
Cmu07g0611 652 NCBIfam PAS domain S-box protein 94 189 IPR000014 -
Cmu07g0611 652 SUPERFAMILY F-box domain 234 291 IPR036047 GO:0005515(InterPro)
Cmu07g0611 652 ProSiteProfiles PAS repeat profile. 95 150 IPR000014 -
Cmu07g0611 652 CDD F-box_AtADO-like 239 284 - -
Cmu07g0611 652 FunFam Adagio protein 1 73 201 - -
Cmu07g0611 652 Pfam F-box-like 248 285 IPR001810 GO:0005515(InterPro)
Cmu07g0611 652 Gene3D - 313 534 IPR015915 GO:0005515(InterPro)
Cmu07g0611 652 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 78 647 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Cmu07g0611 652 FunFam Putative LOV domain-containing protein 310 515 - -
Cmu07g0611 652 Pfam PAS domain 89 190 IPR000014 -
Cmu07g0611 652 Pfam Galactose oxidase, central domain 447 498 - -
Cmu07g0611 652 Pfam Galactose oxidase, central domain 398 443 - -
Cmu07g0611 652 CDD PAS 79 189 IPR000014 -
Cmu07g0611 652 SUPERFAMILY Kelch motif 319 538 IPR015915 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0611 K12116 - - csv:101222712 1249.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0611 Cmu-Chr7:8095038 Cmu11g1221 Cmu-Chr11:23855730 3.60E-220 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34