Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0660 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGCGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCGTCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTGACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAAGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCCTTGGTCAATCTATTAACTTCTGATGACGTTTTGATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCGAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 44.12 MAGIVAGDSDSAPALALLDFVRDVVRMSARTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10848268 10851427 - CmPI595203_07g006600.1 Cmu07g0660 420211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0660 657 Coils Coil 637 657 - -
Cmu07g0660 657 FunFam RING-type E3 ubiquitin transferase 275 351 - -
Cmu07g0660 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cmu07g0660 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cmu07g0660 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 Gene3D - 558 656 IPR011989 -
Cmu07g0660 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0660 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cmu07g0660 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 MobiDBLite consensus disorder prediction 251 275 - -
Cmu07g0660 657 Gene3D - 359 452 IPR011989 -
Cmu07g0660 657 Gene3D - 453 557 IPR011989 -
Cmu07g0660 657 SUPERFAMILY RING/U-box 274 351 - -
Cmu07g0660 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu07g0660 657 Coils Coil 153 173 - -
Cmu07g0660 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cmu07g0660 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cmu07g0660 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cmu07g0660 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cmu07g0660 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cmu07g0660 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2020 Cmu-Chr2:33917099 Cmu07g0660 Cmu-Chr7:10848268 1.30E-60 dispersed
Cmu05g2175 Cmu-Chr5:31213570 Cmu07g0660 Cmu-Chr7:10848268 8.50E-09 dispersed
Cmu06g0911 Cmu-Chr6:12631594 Cmu07g0660 Cmu-Chr7:10848268 1.40E-16 dispersed
Cmu07g0660 Cmu-Chr7:10848268 Cmu11g0608 Cmu-Chr11:6653490 9.70E-40 dispersed
Cmu07g0660 Cmu-Chr7:10848268 Cmu01g0588 Cmu-Chr1:6415191 6.60E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0660 - - - 0.0