Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0680 ATGGACTTGACCAACTTTCTTCTCTCTGTTTTCTTCTTCTTCTTCGCTTCGTTTCCATTTCCATCCACATCATCTCCGCCATTTTTCCCGCCCCAAGCTCTTCCCACCAAATCCGGCTATCTTCCGATCAACGCCACCACCGGCTCCGCCATTTACTTCGCTTTTTACGAAGCCCAAACCCCAATTTCTTCCATCTCAAAAACCCCTCTTCTAATTTGGCTTCAAGGCGGCCCTGGGTGTTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCATGGCGGGTCAACTTCCACAAACATAAAACCGAACCCATTTCCCTAATCCCCAACCCAGCCCCCTGGAACCGAATATTTGGCCTTCTATTTCTCGACAACCCAATTGGAACTGGCTTCAGCATTGCCGCAACAAAACATGAGATCCCTACAAATCAAAACTCGGTTTCTAAGCATCTTTTTTCTGCAATTTCTTCCTTTATTAAGCTGGATCCAGCGTTTAAGGATCGACCCATTTACATTACAGGGGAGAGTTATGCAGGGAAATACGTACCTTCAATTGGGTATTACATTTTAAAGAAAAACCCCAAATTGCCTTTTGATAAAAGGGTCAATTTGGTTGGTGTTGCCATTGGAGATGGATTAACAGATCCTATTACTCAAGTTGCTACTCATGGCTTGAATGCTTTCTATTCAGGGCTGATTAATGAAAGGCAAAAACAGGAGATGGAAATTGCTCAAATGAATGCTGTGGAGTTGACCAAGATGGGGAAATGGAATGAAGCCACAAATGCAAGGAATAAGGTATTGGATATGCTCAAGAACATGACTGAATTGGCTACTTTGTATGATTATACAAGAAAGTCTCCTTATAATTCTGAATTGGTAGATGAGCTTTTGAGTTTCAAGGAGGTGAAGAGGGCACTGGGAGTGAAGAATGAGTCCATGGTTTTTGAAGGGTGTAGTGATGTTGTTGGAGAAGCTTTGAAGAGTGATGTAATGAAGAGTGTGAGATATAAGGTTGACTTTTTAGTGAATAATAGTAAGGTTTTGCTTTATCAAGGGCAGTATGATTTGAGGGATGGTGTGGTTTCAACTGAGGCTTGGGTTAAGAAGCTGAAATGGGGTGAGATTGAGAATTATTTGCAAGTAGATAGAAAGATTTGGAGAGTTGGAGATAAGTTAGCTGGCTATGTTCAGAAATGGAAGAGTTTGAGCAATGTTGTTGTGTTGGGAGCTGGTCATCTTCTTCCTAATGATCAAGCTTTGAACTCTCAAGCAATGATTGAAGGTTGGGTTTTGGAGAAGGGAGTTTTTGGTGATGATAAAGCACATGAGAAGAAGCCTTCTGGTATTAGTGATTTTGGGGTTTGGTGA 1371 42.23 MDLTNFLLSVFFFFFASFPFPSTSSPPFFPPQALPTKSGYLPINATTGSAIYFAFYEAQTPISSISKTPLLIWLQGGPGCSSMVGNFFELGPWRVNFHKHKTEPISLIPNPAPWNRIFGLLFLDNPIGTGFSIAATKHEIPTNQNSVSKHLFSAISSFIKLDPAFKDRPIYITGESYAGKYVPSIGYYILKKNPKLPFDKRVNLVGVAIGDGLTDPITQVATHGLNAFYSGLINERQKQEMEIAQMNAVELTKMGKWNEATNARNKVLDMLKNMTELATLYDYTRKSPYNSELVDELLSFKEVKRALGVKNESMVFEGCSDVVGEALKSDVMKSVRYKVDFLVNNSKVLLYQGQYDLRDGVVSTEAWVKKLKWGEIENYLQVDRKIWRVGDKLAGYVQKWKSLSNVVVLGAGHLLPNDQALNSQAMIEGWVLEKGVFGDDKAHEKKPSGISDFGVW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11914260 11915630 - CmPI595203_07g006800.1 Cmu07g0680 420231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0680 456 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185(InterPro)
Cmu07g0680 456 SUPERFAMILY alpha/beta-Hydrolases 26 431 IPR029058 -
Cmu07g0680 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 403 416 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 Gene3D alpha/beta hydrolase 29 443 IPR029058 -
Cmu07g0680 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 427 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 Pfam Serine carboxypeptidase 33 431 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cmu07g0680 456 Coils Coil 234 254 - -
Cmu07g0680 456 FunFam Carboxypeptidase 21 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0680 K09645 - - csv:101205133 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0680 Cmu-Chr7:11914260 Cmu08g0721 Cmu-Chr8:19562538 2.80E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g425 . . . . . . . . . . . . . . . . . Bhi07g00300 . . Lac13g1488 . . . Cla07g00633 Cam07g0653 Cec07g0712 Cco07g0712 Clacu07g0653 Cmu07g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31