Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0686 ATGGCAATTTTACCCACCACCTCTTCAAGATTGGATCTCTCCATCTCTGTACCAGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAAGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTCGACAAAATCATACTTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAGTTAAAGCAAACAGAAATGGAATGTGAGTATTTGAAAAGATGGTTCGGGTTATTGACGGAACAGAACAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGCGAGCCGCTGCCAGCGTCGAATCTCACAATGTGCCCACGCTGCGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGCATTGTCGTTTAA 591 46.87 MAILPTTSSRLDLSISVPGFNSFSSPLPPSVGRDLDMNKAPDEEEWMMGSMEEDEENNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12646462 12652117 + CmPI595203_07g006860.1 Cmu07g0686 420237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0686 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0686 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 188 IPR050762 -
Cmu07g0686 196 SMART halz 121 164 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g0686 196 FunFam Homeobox-leucine zipper protein 18 50 126 - -
Cmu07g0686 196 SMART HOX_1 63 125 IPR001356 GO:0003677(InterPro)
Cmu07g0686 196 CDD homeodomain 64 122 IPR001356 GO:0003677(InterPro)
Cmu07g0686 196 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cmu07g0686 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu07g0686 196 Gene3D - 57 129 - -
Cmu07g0686 196 Coils Coil 134 154 - -
Cmu07g0686 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cmu07g0686 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0583 Cmu-Chr1:6315552 Cmu07g0686 Cmu-Chr7:12646462 2.90E-57 dispersed
Cmu07g0686 Cmu-Chr7:12646462 Cmu10g2496 Cmu-Chr10:31622757 1.20E-33 dispersed
Cmu07g0686 Cmu-Chr7:12646462 Cmu09g0364 Cmu-Chr9:3512101 1.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6508 PF00046 Homeodomain 1.10E-16 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0686 K09338 - csv:101222713 369.007