Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0714 ATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCGCCAACAAATCTGAGCTCTATTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCCTCCACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGCCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGCCGTTTATGAACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGGAACAGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGGTAATTCATGCTAATATTGTGTACCAAATAAATGAGGACTAG 1608 48.32 MDPPTSYRSRRTANKSELYSTVVIHSNSDSDSDNNPDDRNLHPPRRPPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLPFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNRESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKVIHANIVYQINED 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14083716 14091837 - CmPI595203_07g007140.1 Cmu07g0714 420265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0714 535 SUPERFAMILY Protein kinase-like (PK-like) 269 522 IPR011009 -
Cmu07g0714 535 ProSiteProfiles Protein kinase domain profile. 272 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0714 535 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 216 522 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cmu07g0714 535 MobiDBLite consensus disorder prediction 25 101 - -
Cmu07g0714 535 MobiDBLite consensus disorder prediction 229 268 - -
Cmu07g0714 535 SMART serkin_6 272 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0714 535 MobiDBLite consensus disorder prediction 176 199 - -
Cmu07g0714 535 CDD STKc_MAP4K3_like 271 522 - -
Cmu07g0714 535 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524(InterPro)
Cmu07g0714 535 Pfam Protein kinase domain 272 522 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0714 535 MobiDBLite consensus disorder prediction 126 146 - -
Cmu07g0714 535 FunFam serine/threonine-protein kinase dst1 isoform X1 269 531 - -
Cmu07g0714 535 Gene3D Transferase(Phosphotransferase) domain 1 268 534 - -
Cmu07g0714 535 FunFam Aurora kinase A 264 353 - -
Cmu07g0714 535 MobiDBLite consensus disorder prediction 31 46 - -
Cmu07g0714 535 MobiDBLite consensus disorder prediction 116 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0714 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0714 Cmu-Chr7:14083716 Cmu11g1171 Cmu-Chr11:22544800 2.20E-271 dispersed
Cmu07g0714 Cmu-Chr7:14083716 Cmu03g2132 Cmu-Chr3:29735376 3.70E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1784 . 69 756 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Cmu11g1171 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.5e-67 252.3
Cmu07g0714 . 270 522 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.4e-65 247.3
Cmu11g1784 . 69 753 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.7e-231 798.1
Cmu11g1171 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.4e-67 253.4
Cmu07g0714 . 270 522 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.4e-65 248.1
Cmu11g1171 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Cmu07g0714 . 4 522 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cmu07g0712 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-81 300.8
Cmu09g1829 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.7e-253 870.5
Cmu05g0488 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Cmu10g0933 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.9e-248 854.0
Cmu10g0933 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Cmu10g2050 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 1.5e-132 470.3
Cmu10g0933 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.8e-118 422.2
Cmu10g2050 . 1 671 MAP Kinase Kinase Kinase Kinase AT1G79640 59.9 1.1e-216 750.0
Cmu09g1829 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cmu10g2050 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.1e-87 320.1
Cmu10g0933 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.4e-75 280.0
Cmu05g0488 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.7e-143 505.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75655 PF00069 Pkinase 4.90E-66 CL0016 Cmu PK