Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0780 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTGGGGGTGGGCGTCGGGGTGGGTCTTGGATTAGCCACCGGACAGAGCGTCAACAAATGGTCTGCCTCTAATTCTTCCTCAAACCTAATCACCGCCGATAAATTAGAACAAGAAATGCTTAAACACATTGTTAATGGCCGTGAAAGCAAAGTCACTTTTGATGAATTCCCTTATTATCTCAGTGAACAGACACGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTCTCTAAGTTCACTCGAAACCTTTCTCCAGCAAGTCGAGCCATCTTACTCTCTGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAAGCCAAACTGTTGCTTTTGGATATTACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGCACTTCAGTCAAGGAATCTGGTTTTAAAAGGTCTACTTCAGAGTCAACACTGGAGAGATTGTCTGGCTTATTTGGATCATTTTCAATCCTTCCACCCAGGGAAGAACAAAAAATAGGTTCATTGCGAAGGCAACATAGTGGTGTGGAACTTGCATCCTGGGGAAAGGAAGGATCTTCCAATCTTCCAAAACTTCGAAGAAATGCCTCTGCTGCGGCTAACATTAATAACCTTGCTTCGCAATGCAATGTCGACAAATCAGCTCCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAGTCTCTGTATAAGGTTCTTCTTTATGTGTCGAAAGCAAGTCCCATTGTTTTATATCTTCGTGACGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATATCTTGTTCCAGAAAATGCTACAAAAACTGTCTGGGTCAATTTTGATTCTTGGTTCACGTACTATTGATTCGAGCAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATCGAGATCAGGCCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGCAAATGATCTTGATTGTGACGATCTCGACTCAATCTGTGTTGCTGACACCTTGGTTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAACAAGGATCCGGAATATAGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGACTGAACATATTCCAGGCAGGAAAATCCACTGGCAAAAATACTGTACAGCTTGAAGCACAAGCTGAAGCTTCAAAGGACTCGGGAGCAGCAGTGAAATCCGAAGCAAAATCCGATACCACAGCTGCTGAAAACAGAAGTGAAACAGCACCTGCTGCTGCTGTGGCAAAAACTGATGGAGAGACTGCTGCTCCAGCTGCAAAAGCCCCTGAAGTTCCACCAGATAATGAGTTTGAGAAACGTATTAGGCCAGAGGTCATACCGGCGAATGAGATTGGTGTTACATTTTCTGATATTGGTGCCATGGAGGAGATCAAAGATTCTCTTCAGGAACTCGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCCGGAGCAAGCTTCATTAATGTATCGATGTCTACCATAACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGGGCTTTATTCACATTGGCAGCCAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGCCAGCGAACAAGAGTTGGTGAGCATGAGGCGATGAGGAAGATAAAGAATGAGTTCATGACTCACTGGGATGGGCTCTTGACGAAGCCAGGGGAGCGTGTACTCGTTCTTGCAGCAACGAATAGGCCATTTGACCTCGATGAAGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGGTTACCAACAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCTACAATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTCTGCATGACGGCTGCGTATCGACCTGTTCGGGAACTAATACAGCAAGAAAGACTAAAGGATATGGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGGCAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCATTGAATATGGAGGATTTCAAACTAGCAAAGAATCAGGTTGCAGCCAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTGACTTATTTCCTGCAGCTAGTTTCTTTGAATGGGCTGGTGCTGCTCTGA 2538 43.62 MEQKGLLLSALSVGVGVGVGLGLATGQSVNKWSASNSSSNLITADKLEQEMLKHIVNGRESKVTFDEFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESGFKRSTSESTLERLSGLFGSFSILPPREEQKIGSLRRQHSGVELASWGKEGSSNLPKLRRNASAAANINNLASQCNVDKSAPLKHMSSWAFEEKLLIQSLYKVLLYVSKASPIVLYLRDVDRFLSKSNRVYILFQKMLQKLSGSILILGSRTIDSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKMIKVQDNRNHIMEVLSANDLDCDDLDSICVADTLVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLIISSKSLSHGLNIFQAGKSTGKNTVQLEAQAEASKDSGAAVKSEAKSDTTAAENRSETAPAAAVAKTDGETAAPAAKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPTAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDMEKKRRAAEGQNKAGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELKQWNELYGEGGSRKKQQLTYFLQLVSLNGLVLL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19672498 19678578 + CmPI595203_07g007800.1 Cmu07g0780 420331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0780 845 Gene3D - 519 802 IPR027417 -
Cmu07g0780 845 MobiDBLite consensus disorder prediction 447 509 - -
Cmu07g0780 845 MobiDBLite consensus disorder prediction 754 775 - -
Cmu07g0780 845 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 33 833 IPR051701 GO:0005741(PANTHER)
Cmu07g0780 845 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 519 693 - -
Cmu07g0780 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 758 IPR027417 -
Cmu07g0780 845 Pfam AAA+ lid domain 714 756 IPR041569 -
Cmu07g0780 845 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu07g0780 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 349 IPR027417 -
Cmu07g0780 845 Gene3D - 692 796 - -
Cmu07g0780 845 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu07g0780 845 SMART AAA_5 556 693 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0780 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0780 Cmu-Chr7:19672498 Cmu09g0227 Cmu-Chr9:2355155 8.30E-52 dispersed
Cmu03g0973 Cmu-Chr3:4328823 Cmu07g0780 Cmu-Chr7:19672498 1.10E-160 transposed
Cmu09g0442 Cmu-Chr9:4168806 Cmu07g0780 Cmu-Chr7:19672498 5.80E-108 transposed
Cmu09g0568 Cmu-Chr9:5208437 Cmu07g0780 Cmu-Chr7:19672498 7.30E-138 transposed
Cmu01g0084 Cmu-Chr1:685597 Cmu07g0780 Cmu-Chr7:19672498 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75