Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0816 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAAAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTGGTAACAACAACAACGACAACAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATGCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATAGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCTCCACAGCGCCGCAGATAGGGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACGACAATGTTGTCGTCGTCTCAATTTCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1167 44.04 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECGNNNNDNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDASSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPSTAPQIGAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMLMPMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20749924 20751090 - CmPI595203_07g008160.1 Cmu07g0816 420367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0816 388 MobiDBLite consensus disorder prediction 15 30 - -
Cmu07g0816 388 ProSiteProfiles B3 DNA-binding domain profile. 75 179 IPR003340 GO:0003677(InterPro)
Cmu07g0816 388 Pfam B3 DNA binding domain 75 178 IPR003340 GO:0003677(InterPro)
Cmu07g0816 388 CDD B3_DNA 73 162 IPR003340 GO:0003677(InterPro)
Cmu07g0816 388 MobiDBLite consensus disorder prediction 15 56 - -
Cmu07g0816 388 SMART B3_2 75 179 IPR003340 GO:0003677(InterPro)
Cmu07g0816 388 SUPERFAMILY DNA-binding pseudobarrel domain 72 177 IPR015300 -
Cmu07g0816 388 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 311 IPR044800 GO:0003700(InterPro)
Cmu07g0816 388 FunFam B3 domain-containing protein 68 187 - -
Cmu07g0816 388 Gene3D - 68 183 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0816 K09287 - - csv:101220139 508.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0229 Cmu-Chr6:2517799 Cmu07g0816 Cmu-Chr7:20749924 1.70E-51 dispersed
Cmu07g0816 Cmu-Chr7:20749924 Cmu08g0698 Cmu-Chr8:19268658 2.30E-09 dispersed
Cmu10g2596 Cmu-Chr10:32767911 Cmu07g0816 Cmu-Chr7:20749924 1.10E-38 transposed
Cmu01g0125 Cmu-Chr1:1137977 Cmu07g0816 Cmu-Chr7:20749924 3.90E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2596 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.5e-48 187.2
Cmu06g0229 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cmu07g0816 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.5e-40 160.6
Cmu01g0125 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cmu05g2358 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Cmu01g0125 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cmu06g0229 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 3.6e-53 205.7
Cmu07g0816 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.6e-51 198.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cmu10g2596 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.3e-38 155.6
Cmu10g2596 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.1e-44 174.9
Cmu06g0229 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cmu01g0125 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cmu07g0816 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Cmu01g0125 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cmu06g0229 . 82 317 RAV Transcription Factor Family AT3G61970 50.2 4.0e-49 192.2
Cmu07g0816 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.9e-49 191.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cmu06g0229 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.4e-42 169.9
Cmu01g0125 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cmu07g0816 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cmu10g2596 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Cmu06g0229 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cmu06g1286 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Cmu03g1980 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Cmu06g1286 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Cmu03g1980 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cmu05g2358 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Cmu03g1564 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cmu01g0125 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cmu06g0229 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cmu05g2358 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.5e-100 360.5
Cmu03g1564 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cmu05g2358 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Cmu03g1564 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.1e-93 338.6
Cmu10g2596 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.8e-39 157.9
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cmu06g0229 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cmu05g2358 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.5e-100 360.5
Cmu03g1564 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cmu06g1286 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Cmu03g1980 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cmu10g2596 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.1e-44 174.9
Cmu06g0229 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cmu01g0125 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cmu07g0816 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Cmu06g0229 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.4e-42 169.9
Cmu01g0125 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cmu07g0816 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cmu10g2596 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.5e-48 187.2
Cmu06g0229 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cmu07g0816 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.5e-40 160.6
Cmu01g0125 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cmu05g2358 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Cmu10g2596 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Cmu06g0229 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cmu01g0125 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cmu06g0229 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 3.6e-53 205.7
Cmu07g0816 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.6e-51 198.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cmu10g2596 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.3e-38 155.6
Cmu06g1286 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Cmu03g1980 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Cmu01g0125 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cmu06g0229 . 82 317 RAV Transcription Factor Family AT3G61970 50.2 4.0e-49 192.2
Cmu07g0816 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.9e-49 191.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cmu05g2358 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Cmu03g1564 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cmu01g0125 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cmu06g0229 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cmu05g2358 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Cmu03g1564 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.1e-93 338.6
Cmu10g2596 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.8e-39 157.9
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cmu06g0229 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6514 PF02362 B3 1.40E-27 CL0405 Cmu TF