Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0835 ATGAGAACACTGTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCTGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCACAAAGTGACAGTAGAAGACAACCAGCAAAATCATCATCGGCTATCACCTGTTCAAGAGGCTAACGATGATGGTCATGCCGAGACTGATACAAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.81 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21295967 21298447 + CmPI595203_07g008350.1 Cmu07g0835 420386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0835 186 MobiDBLite consensus disorder prediction 150 170 - -
Cmu07g0835 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 FunFam B-box zinc finger protein 19 2 92 - -
Cmu07g0835 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cmu07g0835 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Cmu07g0835 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cmu07g0835 186 Gene3D Classic Zinc Finger 2 96 - -
Cmu07g0835 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Cmu07g0835 186 MobiDBLite consensus disorder prediction 106 186 - -
Cmu07g0835 186 MobiDBLite consensus disorder prediction 135 149 - -
Cmu07g0835 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0835 Cmu-Chr7:21295967 Cmu07g1002 Cmu-Chr7:24755248 2.20E-21 dispersed
Cmu07g0835 Cmu-Chr7:21295967 Cmu01g1950 Cmu-Chr1:32815443 5.20E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6516 PF00643 zf-B_box 2.40E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0835 - - - 0.0