Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g0883 | ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATCTTCCTACAACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGACTGGAAACGTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCACCTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTACGGCGGTGTTTCGGTGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACCTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCAGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTCTTCCCCCAACATCTTAA | 819 | 52.38 | MAGFFPLGGAGSSGRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPQYPTPLSTYIATGTQFFLPPTS | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 22238864 | 22239771 | - | CmPI595203_07g008830.1 | Cmu07g0883 | 420434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g0883 | 272 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
| Cmu07g0883 | 272 | Pfam | Domain of unknown function (DUF702) | 96 | 217 | - | - | |
| Cmu07g0883 | 272 | NCBIfam | putative zinc finger domain, LRP1 type | 97 | 139 | IPR006510 | - | |
| Cmu07g0883 | 272 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 266 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
| Cmu07g0883 | 272 | NCBIfam | LRP1 C-terminal domain | 169 | 216 | IPR006511 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g2270 | Cmu-Chr2:36283967 | Cmu07g0883 | Cmu-Chr7:22238864 | 1.20E-32 | dispersed | |
| Cmu07g0883 | Cmu-Chr7:22238864 | Cmu09g1351 | Cmu-Chr9:19959574 | 1.70E-43 | dispersed | |
| Cmu01g1940 | Cmu-Chr1:32742786 | Cmu07g0883 | Cmu-Chr7:22238864 | 4.30E-52 | wgd | |
| Cmu05g1910 | Cmu-Chr5:28988951 | Cmu07g0883 | Cmu-Chr7:22238864 | 2.20E-43 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6520 | PF05142 | DUF702 | 1.20E-50 | No_clan | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g0883 | K27807 | - | csv:101216097 | 385.571 |