Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0899 ATGAACCACCAAGAAGCTGAAGAGCATGAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.24 MNHQEAEEHEAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKNRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVIMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22791708 22794406 + CmPI595203_07g008990.1 Cmu07g0899 420450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0899 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Cmu07g0899 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Cmu07g0899 216 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Cmu07g0899 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cmu07g0899 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu07g0899 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cmu07g0899 216 MobiDBLite consensus disorder prediction 28 60 - -
Cmu07g0899 216 Coils Coil 134 154 - -
Cmu07g0899 216 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Cmu07g0899 216 Coils Coil 103 130 - -
Cmu07g0899 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Cmu07g0899 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677(InterPro)
Cmu07g0899 216 Gene3D - 47 119 - -
Cmu07g0899 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 159 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1868 Cmu-Chr1:32269744 Cmu07g0899 Cmu-Chr7:22791708 5.00E-41 dispersed
Cmu07g0899 Cmu-Chr7:22791708 Cmu10g2673 Cmu-Chr10:33529430 3.10E-19 dispersed
Cmu07g0899 Cmu-Chr7:22791708 Cmu01g1405 Cmu-Chr1:27572278 1.60E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6523 PF00046 Homeodomain 4.70E-17 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0899 K09338 - csv:101221080 327.02