Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0903 ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGAAGTTTGTCTCCAGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCACGTAAAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCGGCCCCTCCTCTTTCCGCCGCGACGGGTGCCGCACCAATAGCTCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGAACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACTGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCGGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1209 53.6 MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEVAGSLSPAAAENPNLESDPHVKPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPENPPPQLGEEPGRTTLTGNSGSSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22952426 22955722 - CmPI595203_07g009030.1 Cmu07g0903 420454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0903 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 391 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu07g0903 402 MobiDBLite consensus disorder prediction 1 26 - -
Cmu07g0903 402 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cmu07g0903 402 Gene3D Classic Zinc Finger 41 108 - -
Cmu07g0903 402 FunFam protein indeterminate-domain 12-like 40 108 - -
Cmu07g0903 402 Gene3D Classic Zinc Finger 130 191 - -
Cmu07g0903 402 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cmu07g0903 402 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 196 - -
Cmu07g0903 402 MobiDBLite consensus disorder prediction 1 44 - -
Cmu07g0903 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cmu07g0903 402 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Cmu07g0903 402 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cmu07g0903 402 SMART c2h2final6 61 83 IPR013087 -
Cmu07g0903 402 SMART c2h2final6 137 157 IPR013087 -
Cmu07g0903 402 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cmu07g0903 402 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cmu07g0903 402 MobiDBLite consensus disorder prediction 199 279 - -
Cmu07g0903 402 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0903 Cmu-Chr7:22952426 Cmu08g1461 Cmu-Chr8:26654586 8.20E-90 dispersed
Cmu02g0236 Cmu-Chr2:2245428 Cmu07g0903 Cmu-Chr7:22952426 1.70E-76 transposed
Cmu09g0587 Cmu-Chr9:5392499 Cmu07g0903 Cmu-Chr7:22952426 2.60E-82 transposed
Cmu01g1872 Cmu-Chr1:32295810 Cmu07g0903 Cmu-Chr7:22952426 1.80E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6526 PF00096 zf-C2H2 0.0039 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0903 K25869 - csv:101215476 605.905