Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0912 ATGGTCGTTTCCCTGTTTAATCCGGCCTTTGTTCACTGTTTGATACTCATTTTAGGGCTGAAAATGGCTGTAGAGGAGAAACCAAGAGCCGATAATTCCGCAGAGTCCCCGACTTCGGTTCTGGAAGACGAGGACTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAAAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGAGTTAAGGAAGAGGAGGCAAAAAGACTTGAGGATTCAACAGAATCTGCAAAGTTGAATGACAATCAGTTCACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGATAAGAAATCTGTTGAGAAAAGTAGTGGGCGTGGTTCAAAGAGGAAAACTGCTGCTCGTTATAATAATAGGAAGGCGAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTATTGACTGGTGGCAAGTTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCGTTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACCATGAGTGCTATTATTTATCATGGTGATAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAGAACAGTTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAATTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGACATAGACTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAGCTGTTGAAAATAAACTGCTTCTAACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATATTTTCTCGTCCAATGAGGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGTCATGCCGAGGAAAAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTCTTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATCATAATGTATGCAAACATGACCGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTCTGAGAAGGGATCAGGACATGGTTTTAAAGGAAAACTTAACAATCTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCAGTCTTTGATGAATCCTATACGTATCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGAAAATTTTGCTTACTGGATAGATTGTTGACACGACTATTTGCACGCAAGCATAAAGTCCTTATTTTCTCGCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTGGCGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAGCCACAGGATATTTATTCTTAGTACCCGGGCTGGTGGTCTGGGTATCAACCTCACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACACGTTTACAGACTTGCAACAGCTCAGTCTATAGAGGGCCGCATTCTGAAGAGGGCCTTTAGTAAGTTGAAGCTAGAGCATGTGGTCATTGAAAAGGGGCAATTTCACCAGGAACGAACAAAACCCAACCCTGGAGATATTGTAGAGGAAGAGGATCTACTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGACATTAGCGATGCTGATTTGGAGCGTATTTTAGACCGCTCTGATCTGATTGCGCCATCTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCGATTTATACCCTCTGAAAGGGCCTGGTTGGGAGGTGGTGACACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTAA 2337 41.25 MVVSLFNPAFVHCLILILGLKMAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKKMAEEEQKLLEARVKEEEAKRLEDSTESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEDKKSVEKSSGRGSKRKTAARYNNRKAKRAVAAMLTRSKEGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTMSAIIYHGDKKQREEIRRKSMPRTVGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYIAVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKCHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLSEKGSGHGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFCLLDRLLTRLFARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDVNSSHRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPNPGDIVEEEDLLALLREEDSAEDKMIQTDISDADLERILDRSDLIAPSGSDNEKSKVSGDLYPLKGPGWEVVTPTSTGGVLSTLNS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23084671 23093074 + CmPI595203_07g009120.1 Cmu07g0912 420463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0912 778 Coils Coil 73 105 - -
Cmu07g0912 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 390 IPR014001 -
Cmu07g0912 778 CDD SF2_C_SNF 521 655 IPR049730 -
Cmu07g0912 778 SMART helicmild6 561 645 IPR001650 -
Cmu07g0912 778 FunFam Chromatin complex subunit A 106 449 676 - -
Cmu07g0912 778 Pfam SNF2-related domain 213 509 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cmu07g0912 778 Gene3D - 445 746 IPR027417 -
Cmu07g0912 778 Gene3D - 211 440 IPR038718 -
Cmu07g0912 778 PANTHER SNF2/RAD54 HELICASE FAMILY 71 736 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0044030(PANTHER)
Cmu07g0912 778 FunFam ATP-dependent DNA helicase DDM1 204 448 - -
Cmu07g0912 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 439 IPR027417 -
Cmu07g0912 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 698 IPR001650 -
Cmu07g0912 778 SMART ultradead3 206 401 IPR014001 -
Cmu07g0912 778 Pfam Helicase conserved C-terminal domain 534 645 IPR001650 -
Cmu07g0912 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 731 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0912 K19001 - - csv:101214753 1395.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0583 Cmu-Chr6:6528240 Cmu07g0912 Cmu-Chr7:23084671 7.90E-119 dispersed
Cmu07g0172 Cmu-Chr7:1675970 Cmu07g0912 Cmu-Chr7:23084671 1.10E-71 dispersed
Cmu07g0912 Cmu-Chr7:23084671 Cmu10g2481 Cmu-Chr10:31451516 4.20E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6528 PF00176 SNF2_N 2.70E-64 CL0023 Cmu TR