Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0916 ATGGATTTGTGGTCAATCATGGGGAACAAATTGTTGTTTGTTTTAGAAAAAAACTGCCTTATAAGCTACCTTGGTACAGTTGGCAGGGAAGTGCTCAGTTGGGGAAGATTGCAACCCATCCCATTGGGAGGTATAAATGCTGCATTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGTGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCGAAAGCAGTAATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGATGGAAAAATTTATCAACGTGCTTTTGGTGGTCAGAGCCTGGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAGTTTTTTGTGGAATTTTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATATGGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTGGCTACTGGGGGTTATGGCAGAGCATATTTCTCTGCAACCTCTGCTCATACATGCACTGGAGATGGAAATGCCATGGTTGCACGAGCTGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACGGGAATATATGGTGCTGGGTGCCTTATTACTGAAGGATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGCGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGATGTTGTCTCAAGATCCATGACTATGGAGATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTGCCCCCAGATGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAACCCATTCCAGTCTTACCTACAGTGCATTATAATATGGGTGGAATCCCTACGAATCATTATGGAGAGGTTGTTACAATCAAGGGAGATGATCCAGATGCTGTAATTCCAGGATTGATGGCTGCTGGGGAGGCCGCTTGTGCCTCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGTAGACCAGGGGCACCGCAAAAGCCGTTGGAAAAAGATGCTGGTGAGAAGACTATTGCATGGCTAGATAAATTAAGAAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACCAGGCCTGGGAGAGTTTCCATGATGTGAAGGTCGCGGACAGGGATTTAATATGGAACACTGATTTGATAGAGACGATTGAATTGGAAAATCTTTTGATAAATGCATGTATTACCATGCACTCTGCTGAAGCCAGGAAAGAAAGCAGAGGAGCACATGCTCGGGAAGATTTCTCAAAAAGAGATGATGAGAACTGGATGAAACACACACTGGGATTCTGGGAGAATGAGAAGGTCAGACTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGGTCGAATCATTCCCTCCCAAGGCTCGTGTATACTGA 1755 45.24 MDLWSIMGNKLLFVLEKNCLISYLGTVGREVLSWGRLQPIPLGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEFFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISRPGAPQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCKLIDQAWESFHDVKVADRDLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFSKRDDENWMKHTLGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23254265 23263322 + CmPI595203_07g009160.1 Cmu07g0916 420467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0916 584 Gene3D - 43 408 IPR036188 -
Cmu07g0916 584 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 43 584 IPR030664 GO:0000104(PANTHER)|GO:0005749(PANTHER)|GO:0006121(PANTHER)|GO:0008177(PANTHER)|GO:0009055(PANTHER)|GO:0050660(PANTHER)
Cmu07g0916 584 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 239 342 - -
Cmu07g0916 584 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 239 342 IPR027477 -
Cmu07g0916 584 Gene3D succinate dehydrogenase protein domain 535 584 - -
Cmu07g0916 584 PIRSF SDHA_APRA_LASPO 42 574 - -
Cmu07g0916 584 Pfam Fumarate reductase flavoprotein C-term 452 584 IPR015939 GO:0016491(InterPro)
Cmu07g0916 584 Pfam FAD binding domain 43 397 IPR003953 -
Cmu07g0916 584 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 423 539 - -
Cmu07g0916 584 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 536 584 - -
Cmu07g0916 584 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 43 584 IPR014006 GO:0016627(InterPro)|GO:0022900(InterPro)|GO:0050660(InterPro)
Cmu07g0916 584 NCBIfam succinate dehydrogenase flavoprotein subunit 43 584 IPR011281 GO:0006099(InterPro)|GO:0016627(InterPro)|GO:0050660(InterPro)
Cmu07g0916 584 SUPERFAMILY FAD/NAD(P)-binding domain 43 420 IPR036188 -
Cmu07g0916 584 Gene3D - 424 534 - -
Cmu07g0916 584 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 443 584 IPR037099 GO:0016491(InterPro)
Cmu07g0916 584 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 343 408 - -
Cmu07g0916 584 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 229 347 IPR027477 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0916 K00234 - - csv:101211616 1070.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0652 Cmu-Chr7:10437089 Cmu07g0916 Cmu-Chr7:23254265 0.00E+00 dispersed
Cmu07g0916 Cmu-Chr7:23254265 Cmu09g1822 Cmu-Chr9:34395090 1.30E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41