Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g0930 | ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA | 678 | 47.64 | MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 23476652 | 23477329 | - | CmPI595203_07g009300.1 | Cmu07g0930 | 420481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
Cmu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
Cmu07g0930 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
Cmu07g0930 | 225 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - | |
Cmu07g0930 | 225 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 25 | 172 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cmu07g0930 | 225 | FunFam | Nuclear transcription factor Y subunit B-3 | 26 | 149 | - | - | |
Cmu07g0930 | 225 | SUPERFAMILY | Histone-fold | 34 | 136 | IPR009072 | GO:0046982(InterPro) | |
Cmu07g0930 | 225 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cmu07g0930 | 225 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu07g0930 | 225 | Coils | Coil | 113 | 133 | - | - | |
Cmu07g0930 | 225 | Gene3D | Histone, subunit A | 24 | 157 | IPR009072 | GO:0046982(InterPro) | |
Cmu07g0930 | 225 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0921 | Cmu-Chr2:12303494 | Cmu07g0930 | Cmu-Chr7:23476652 | 1.70E-46 | dispersed | |
Cmu07g0930 | Cmu-Chr7:23476652 | Cmu10g1240 | Cmu-Chr10:5304306 | 1.80E-41 | dispersed | |
Cmu07g0930 | Cmu-Chr7:23476652 | Cmu02g1376 | Cmu-Chr2:27393942 | 5.70E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6530 | PF00808 | CBFD_NFYB_HMF | 6.70E-27 | CL0012 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g0930 | K08065 | - | csv:101214273 | 409.453 |