Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0931 ATGAAGAAACGGCTAAATGGGGGTTTGGTCTTGCTCTGGTTCATCTTTATGGGGCAATTCTATACCAATGCGTCGGCAACTGTAGAAGCTACTGCTCTGCACATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTCTATGGCAACGACATAAGTGGAGAGATTCCAGATGAGCTCGGGAATCTGGAAAATTTGGTTAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCGATTCCAGACACATTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCTGGCTTGATTCCGATTTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGTTTTGCAAATAACTTGGATCTATGTGGTCTGGTGACTGGGAAACCTTGCCCTGGGGATCCTCCCTTTTCTCCACCACCGCCATTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTCTTTGCCACTCCGGCTATCATATTCGTCTATTGGCATTGGAGGAGATCACGAGAAATATTCTTCGATGTCCCAGCAGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTCGGTCGAGGTGGATTCGGTAAAGTCTATAGGGGACGTCTAGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCACCGGAATCTTTTGCGACTACATGGATTTTGTACAACATCAAGTGAACGCCTCCTTGTTTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCTGAAGCTCCTCTGGACTGGCCAACTCGAAAGAAAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATGGATGTGATCCGAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTTTACTGGATGAGGAATTTGAGGCTGTCGTCGGCGACTTTGGTCTCGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACCGCAGTAAGAGGTACTATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAGAAGACCGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTAATAACTGGACAGAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAACTATGATGAAATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCCCCTATGGAACGACCGAAAATGTCTGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTCTATCATGAAACCGAATTAGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCGACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1878 43.61 MKKRLNGGLVLLWFIFMGQFYTNASATVEATALHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNDISGEIPDELGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSHEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHWRRSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSTENVRAFELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23513581 23517609 + CmPI595203_07g009310.1 Cmu07g0931 420482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0931 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g0931 625 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cmu07g0931 625 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Cmu07g0931 625 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cmu07g0931 625 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cmu07g0931 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0931 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cmu07g0931 625 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Cmu07g0931 625 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cmu07g0931 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g0931 625 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Cmu07g0931 625 SUPERFAMILY L domain-like 29 194 - -
Cmu07g0931 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cmu07g0931 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
Cmu07g0931 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Cmu07g0931 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 625 - -
Cmu07g0931 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Cmu07g0931 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g0931 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0931 Cmu-Chr7:23513581 Cmu08g0297 Cmu-Chr8:7323144 4.90E-243 dispersed
Cmu07g0931 Cmu-Chr7:23513581 Cmu07g1697 Cmu-Chr7:32242753 5.10E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75662 PF00069 Pkinase 1.50E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0931 K13418 - csv:101208905 1110.13