Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0942 GATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCGAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACCCTCTCGATCCCCATCCTCAGGTTGCAAAGGCTAGTGGTAGTAAATGGAAGTCAATATCCAATGCTCTATTGGAGTTTTTGAAGAATTTTGACCCATTGTCCAGCGAAAGTAAAGTTGTTTCAGCCAATTTTTTTTTTACTAGGTTTAAGGAGAATGAGTTCAAGCTATGA 1167 41.3 DGSLLLSAAREENRVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNPLDPHPQVAKASGSKWKSISNALLEFLKNFDPLSSESKVVSANFFFTRFKENEFKL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23680861 23695891 + CmPI595203_07g009420.1 Cmu07g0942 420493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0942 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 Gene3D - 16 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 PRINTS MADS domain signature 17 32 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 PRINTS MADS domain signature 32 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 SUPERFAMILY SRF-like 17 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 Coils Coil 109 129 - -
Cmu07g0942 388 SMART madsneu2 8 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 MobiDBLite consensus disorder prediction 304 324 - -
Cmu07g0942 388 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 221 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu07g0942 388 ProSiteProfiles MADS-box domain profile. 17 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0942 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0942 Cmu-Chr7:23680861 Cmu08g0995 Cmu-Chr8:22191298 1.20E-10 dispersed
Cmu07g0942 Cmu-Chr7:23680861 Cmu05g2470 Cmu-Chr5:33672133 4.10E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6534 PF00319 SRF-TF 2.50E-14 No_clan Cmu TF