Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g0942 GATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCGAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACCCTCTCGATCCCCATCCTCAGGTTGCAAAGGCTAGTGGTAGTAAATGGAAGTCAATATCCAATGCTCTATTGGAGTTTTTGAAGAATTTTGACCCATTGTCCAGCGAAAGTAAAGTTGTTTCAGCCAATTTTTTTTTTACTAGGTTTAAGGAGAATGAGTTCAAGCTATGA 1167 41.3 DGSLLLSAAREENRVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNPLDPHPQVAKASGSKWKSISNALLEFLKNFDPLSSESKVVSANFFFTRFKENEFKL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23680861 23695891 + CmPI595203_07g009420.1 Cmu07g0942 420493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g0942 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 Gene3D - 16 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 PRINTS MADS domain signature 17 32 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 PRINTS MADS domain signature 32 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 SUPERFAMILY SRF-like 17 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 Coils Coil 109 129 - -
Cmu07g0942 388 SMART madsneu2 8 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu07g0942 388 MobiDBLite consensus disorder prediction 304 324 - -
Cmu07g0942 388 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 221 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu07g0942 388 ProSiteProfiles MADS-box domain profile. 17 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0942 Cmu-Chr7:23680861 Cmu08g0995 Cmu-Chr8:22191298 1.20E-10 dispersed
Cmu07g0942 Cmu-Chr7:23680861 Cmu05g2470 Cmu-Chr5:33672133 4.10E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6534 PF00319 SRF-TF 2.50E-14 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g0942 - - - 0.0