Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1002 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTTCACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTGTTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTTTAG 897 46.38 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKFTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24755248 24757449 - CmPI595203_07g010020.1 Cmu07g1002 420553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1002 298 MobiDBLite consensus disorder prediction 125 147 - -
Cmu07g1002 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cmu07g1002 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Cmu07g1002 298 FunFam B-box zinc finger protein 22 1 93 - -
Cmu07g1002 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cmu07g1002 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cmu07g1002 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu07g1002 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cmu07g1002 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Cmu07g1002 298 Gene3D Classic Zinc Finger 1 92 - -
Cmu07g1002 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu07g1002 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1950 Cmu-Chr1:32815443 Cmu07g1002 Cmu-Chr7:24755248 6.40E-20 dispersed
Cmu06g0095 Cmu-Chr6:852900 Cmu07g1002 Cmu-Chr7:24755248 9.80E-35 dispersed
Cmu07g0835 Cmu-Chr7:21295967 Cmu07g1002 Cmu-Chr7:24755248 2.20E-21 dispersed
Cmu07g1002 Cmu-Chr7:24755248 Cmu08g1398 Cmu-Chr8:26139667 5.40E-30 dispersed
Cmu07g1002 Cmu-Chr7:24755248 Cmu11g0403 Cmu-Chr11:4458319 2.40E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6539 PF00643 zf-B_box 3.60E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1002 - - - 0.0