Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1007 ATGTGCTGCTCCTTCATACATTCCAACAAAACCACAAACCCGACCCGATCCGGGGAAAAAAAGAAAAAAACTATCGTCTCTCACGTGCGCCGAACTCCGACACGTGTAGCATCTCGACAGAGACCGTTGAGAAACGCTGCTCCGCCGAACCGCCACGTGTTCAACTCTGTTTGGTTCTTCTGTCACAGACGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAACACTTTCCTCCGCCGTTCGCGGTGGTCCATCTAAGATCCGATCGCTGTCGCCGTCCAGCGCCACCGGCGAGCATCCGATTCAGATATCTCTCACTCTCAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTGTTTCTTAGTGTGTGTGCGTGTGTGCGTGAGTGTGTGTTGGAGATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCCGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCAGCAGCTGCAAGCCCGTACGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGGTAATCCGAATGCTGACGGAAGTTCGCTTATACCCTGGCTCAAAAACCTTTCAACGTCATCATCTTCAGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCGGTAACTCCTCCTCTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCTACTCCACCAAGTCCTGGGCGTCAGATTCTTCCCAATCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCGACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTCATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGATGACCTAGAACTCACTCTTGGAAACTCAAGGACCAGGTAA 1383 49.46 MCCSFIHSNKTTNPTRSGEKKKKTIVSHVRRTPTRVASRQRPLRNAAPPNRHVFNSVWFFCHRRKRKRKRKRKRKTLSSAVRGGPSKIRSLSPSSATGEHPIQISLTLSSSSSSSSSSSSLFLSVCACVRECVLEMTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQILPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24814404 24819976 - CmPI595203_07g010070.1 Cmu07g1007 420558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1007 460 MobiDBLite consensus disorder prediction 223 257 - -
Cmu07g1007 460 MobiDBLite consensus disorder prediction 226 257 - -
Cmu07g1007 460 MobiDBLite consensus disorder prediction 83 98 - -
Cmu07g1007 460 MobiDBLite consensus disorder prediction 29 48 - -
Cmu07g1007 460 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 136 460 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cmu07g1007 460 Pfam BES1/BZR1 plant transcription factor, N-terminal 139 274 IPR008540 -
Cmu07g1007 460 MobiDBLite consensus disorder prediction 328 348 - -
Cmu07g1007 460 MobiDBLite consensus disorder prediction 65 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1334 Cmu-Chr3:8442914 Cmu07g1007 Cmu-Chr7:24814404 2.70E-123 dispersed
Cmu07g1007 Cmu-Chr7:24814404 Cmu08g1466 Cmu-Chr8:26688814 2.00E-44 dispersed
Cmu07g1007 Cmu-Chr7:24814404 Cmu01g1863 Cmu-Chr1:32215237 1.50E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1466 . 1 310 BZR Transcription Factor Family AT1G75080 60.6 1.4e-87 320.1
Cmu01g1863 . 95 386 BZR Transcription Factor Family AT1G75080 59.2 1.3e-80 297.0
Cmu08g1466 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 7.8e-86 314.3
Cmu01g1863 . 95 384 BZR Transcription Factor Family AT1G19350 59.5 4.6e-78 288.5
Cmu01g1863 . 73 386 BZR Transcription Factor Family AT3G50750 57.7 2.5e-77 285.8
Cmu08g1466 . 1 305 BZR Transcription Factor Family AT3G50750 50.5 3.6e-60 228.8
Cmu07g1007 . 212 460 BZR Transcription Factor Family AT4G18890 54.2 9.6e-50 193.7
Cmu03g1334 . 80 327 BZR Transcription Factor Family AT4G18890 51.4 2.6e-47 185.7
Cmu07g1007 . 136 460 BZR Transcription Factor Family AT1G78700 73.1 2.9e-117 418.7
Cmu03g1334 . 1 327 BZR Transcription Factor Family AT1G78700 67.8 2.3e-103 372.5
Cmu01g1863 . 95 267 BZR Transcription Factor Family AT4G36780 79.1 3.9e-64 241.9
Cmu08g1466 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6540 PF05687 BES1_N 2.80E-65 No_clan Cmu TF