Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1018 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCCAAGTCCTCCTCTAGAGATCCCAATGCTCTTGGGGGAATTCTTCCGTTGTCCGCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCCGAGCTTCTTCGCGAGATCATTCAGCGGGTTGAGGCTTCAGAAGACGCTTGGCCTAACCGCCACACCGTTGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGGGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTCATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTGACAGATGAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCCTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAACTTTACCATTTATGACAGTCAACCACCACATAACGGTGCAAAGCCATCAAGTAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCGAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATCAGAAGACACTGGAACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAATCTCTTTCTTCCTTATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTCGTCGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATATGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCCCTTCTTTTCTGGGCCGAAAATGAAAAAGGCCGAGGGCCCATTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGGGATCTTCTCTCTTCTGCAACGAGTTCGTTTTCGGGAAGCCGAAGTGGAAACAACGATGGAAGCAAAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGGGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAACTTGCTTCGCATGGACATGATGTCCATATTTTTACATCGCACCACGATAAAAATCGGTGCTTTGAGGAGACCCTTGCTGGAACCTTTCCAGTTACTGTGTATGGTGATTTCCTACCTCGCCACATCTTTTACCGCCTCCATGCAGTTTGTGCATATCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGCCATCTATTGATGTCATTCTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTTAAGCTAAAAAGGTCATCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACAACCATTTTGAGGAGGCTGTACAGAAAACCCATAGACTTCATCGAAGAATTGACAACCGGCATGGCAGATTTGATATTGGTTAATAGCAAATTTACGGCGTCCACTTTTGCCAAGACATTCAAACATCTTAATGCACAAGGAATTCGACCTGCTGTTCTTTATCCAGCTGTCAATGTAGATCAGTTTGATGAGCCCCATTCTTCTAAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCTAAGCTTGGCACACTTGAAGGAGGCACTTTTCAAGATTACAATGTAGCTGATGTTTCCTTGGTCATTGCTGGTGGCTTTGATAAACGGCTAAGAGAGAATGTTGAATACTTGGAGGAGCTCAGGAATTTAGCTGAAAGAGAAGGTGTATCCGAACGTGTTACCTTCATCACATCCTGCTCAACACTCGAAAGAAACACCCTCCTTTCCCAATGTCTGTGTGTCCTCTACACGCCAAAGGACGAACACTTCGGCATTGTTCCTTTGGAAGCCATGGCAGCTTACAAGCCTGTTATTGCATGCAACAGTGGGGGTCCAGTCGAGACCATAAAACATGGCGCTACCGGATTTCTTTGTTTGCCTAATCCTCGAGAGTTCTCTCTGGCAATGGCGAAACTCATTCAGGATCCTGCCATGGCAGCAAGAATGGGTAGGGAAGCCCGACAACACATCATCGAATCTTTCTCTACAAAGATATTTGGTCAGCAACTGAATCAATACCTTGTCGATGTCGCTCGACTTAAGAGAGACTGA 2508 45.65 MSLRRSFLSRKFSSKSSSRDPNALGGILPLSASDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDAWPNRHTVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSLTDEGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPCENSKMKKSESLSSLSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDMFTMDYRQPLSAFQAFAICLTSFGTKLALLFWAENEKGRGPINGKLPDRQKLRGIFSLLQRVRFREAEVETTMEAKRRSKMRIAIIHPDLGIGGAERLIVDAAVELASHGHDVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWPSIDVILADQVSVVVPILKLKRSSKVVFYCHFPDLLLAKHTTILRRLYRKPIDFIEELTTGMADLILVNSKFTASTFAKTFKHLNAQGIRPAVLYPAVNVDQFDEPHSSKLSFLSINRFERKKNIELAISAFAKLGTLEGGTFQDYNVADVSLVIAGGFDKRLRENVEYLEELRNLAEREGVSERVTFITSCSTLERNTLLSQCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVETIKHGATGFLCLPNPREFSLAMAKLIQDPAMAARMGREARQHIIESFSTKIFGQQLNQYLVDVARLKRD 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24918032 24927152 - CmPI595203_07g010180.1 Cmu07g1018 420569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1018 835 Gene3D Glycogen Phosphorylase B; 432 632 - -
Cmu07g1018 835 Gene3D Tubby Protein; Chain A 112 384 IPR025659 -
Cmu07g1018 835 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 431 831 IPR027054 GO:0000033(PANTHER)|GO:0004378(InterPro)|GO:0006486(InterPro)|GO:0006490(PANTHER)|GO:0012505(PANTHER)
Cmu07g1018 835 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Cmu07g1018 835 Coils Coil 686 706 - -
Cmu07g1018 835 Pfam F-box domain 56 99 IPR001810 GO:0005515(InterPro)
Cmu07g1018 835 Pfam Glycosyltransferase Family 4 447 627 IPR028098 -
Cmu07g1018 835 CDD F-box_AtTLP-like 56 100 - -
Cmu07g1018 835 CDD GT4_ALG2-like 436 822 - -
Cmu07g1018 835 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 632 814 - -
Cmu07g1018 835 Gene3D Glycogen Phosphorylase B; 633 829 - -
Cmu07g1018 835 SUPERFAMILY Tubby C-terminal domain-like 107 384 IPR025659 -
Cmu07g1018 835 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 436 826 - -
Cmu07g1018 835 Pfam Glycosyl transferases group 1 635 807 IPR001296 GO:0016757(InterPro)
Cmu07g1018 835 Pfam Tub family 117 380 IPR000007 -
Cmu07g1018 835 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 433 631 - -
Cmu07g1018 835 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Cmu07g1018 835 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cmu07g1018 835 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1018 Cmu-Chr7:24918032 Cmu08g0647 Cmu-Chr8:18687510 2.00E-98 dispersed
Cmu07g1018 Cmu-Chr7:24918032 Cmu05g0635 Cmu-Chr5:5459149 3.90E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6541 PF01167 Tub 1.20E-102 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1018 K03843 - csv:101211733 767.689