Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu07g1018 | ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCCAAGTCCTCCTCTAGAGATCCCAATGCTCTTGGGGGAATTCTTCCGTTGTCCGCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCCGAGCTTCTTCGCGAGATCATTCAGCGGGTTGAGGCTTCAGAAGACGCTTGGCCTAACCGCCACACCGTTGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGGGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTCATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTGACAGATGAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCCTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAACTTTACCATTTATGACAGTCAACCACCACATAACGGTGCAAAGCCATCAAGTAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCGAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATCAGAAGACACTGGAACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAATCTCTTTCTTCCTTATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTCGTCGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATATGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCCCTTCTTTTCTGGGCCGAAAATGAAAAAGGCCGAGGGCCCATTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGGGATCTTCTCTCTTCTGCAACGAGTTCGTTTTCGGGAAGCCGAAGTGGAAACAACGATGGAAGCAAAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGGGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAACTTGCTTCGCATGGACATGATGTCCATATTTTTACATCGCACCACGATAAAAATCGGTGCTTTGAGGAGACCCTTGCTGGAACCTTTCCAGTTACTGTGTATGGTGATTTCCTACCTCGCCACATCTTTTACCGCCTCCATGCAGTTTGTGCATATCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGCCATCTATTGATGTCATTCTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTTAAGCTAAAAAGGTCATCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACAACCATTTTGAGGAGGCTGTACAGAAAACCCATAGACTTCATCGAAGAATTGACAACCGGCATGGCAGATTTGATATTGGTTAATAGCAAATTTACGGCGTCCACTTTTGCCAAGACATTCAAACATCTTAATGCACAAGGAATTCGACCTGCTGTTCTTTATCCAGCTGTCAATGTAGATCAGTTTGATGAGCCCCATTCTTCTAAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCTAAGCTTGGCACACTTGAAGGAGGCACTTTTCAAGATTACAATGTAGCTGATGTTTCCTTGGTCATTGCTGGTGGCTTTGATAAACGGCTAAGAGAGAATGTTGAATACTTGGAGGAGCTCAGGAATTTAGCTGAAAGAGAAGGTGTATCCGAACGTGTTACCTTCATCACATCCTGCTCAACACTCGAAAGAAACACCCTCCTTTCCCAATGTCTGTGTGTCCTCTACACGCCAAAGGACGAACACTTCGGCATTGTTCCTTTGGAAGCCATGGCAGCTTACAAGCCTGTTATTGCATGCAACAGTGGGGGTCCAGTCGAGACCATAAAACATGGCGCTACCGGATTTCTTTGTTTGCCTAATCCTCGAGAGTTCTCTCTGGCAATGGCGAAACTCATTCAGGATCCTGCCATGGCAGCAAGAATGGGTAGGGAAGCCCGACAACACATCATCGAATCTTTCTCTACAAAGATATTTGGTCAGCAACTGAATCAATACCTTGTCGATGTCGCTCGACTTAAGAGAGACTGA | 2508 | 45.65 | MSLRRSFLSRKFSSKSSSRDPNALGGILPLSASDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDAWPNRHTVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSLTDEGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPCENSKMKKSESLSSLSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDMFTMDYRQPLSAFQAFAICLTSFGTKLALLFWAENEKGRGPINGKLPDRQKLRGIFSLLQRVRFREAEVETTMEAKRRSKMRIAIIHPDLGIGGAERLIVDAAVELASHGHDVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWPSIDVILADQVSVVVPILKLKRSSKVVFYCHFPDLLLAKHTTILRRLYRKPIDFIEELTTGMADLILVNSKFTASTFAKTFKHLNAQGIRPAVLYPAVNVDQFDEPHSSKLSFLSINRFERKKNIELAISAFAKLGTLEGGTFQDYNVADVSLVIAGGFDKRLRENVEYLEELRNLAEREGVSERVTFITSCSTLERNTLLSQCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVETIKHGATGFLCLPNPREFSLAMAKLIQDPAMAARMGREARQHIIESFSTKIFGQQLNQYLVDVARLKRD | 835 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24918032 | 24927152 | - | CmPI595203_07g010180.1 | Cmu07g1018 | 420569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu07g1018 | 835 | Gene3D | Glycogen Phosphorylase B; | 432 | 632 | - | - | |
Cmu07g1018 | 835 | Gene3D | Tubby Protein; Chain A | 112 | 384 | IPR025659 | - | |
Cmu07g1018 | 835 | PANTHER | ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 | 431 | 831 | IPR027054 | GO:0000033(PANTHER)|GO:0004378(InterPro)|GO:0006486(InterPro)|GO:0006490(PANTHER)|GO:0012505(PANTHER) | |
Cmu07g1018 | 835 | ProSitePatterns | Tub family signature 1. | 313 | 326 | IPR018066 | - | |
Cmu07g1018 | 835 | Coils | Coil | 686 | 706 | - | - | |
Cmu07g1018 | 835 | Pfam | F-box domain | 56 | 99 | IPR001810 | GO:0005515(InterPro) | |
Cmu07g1018 | 835 | Pfam | Glycosyltransferase Family 4 | 447 | 627 | IPR028098 | - | |
Cmu07g1018 | 835 | CDD | F-box_AtTLP-like | 56 | 100 | - | - | |
Cmu07g1018 | 835 | CDD | GT4_ALG2-like | 436 | 822 | - | - | |
Cmu07g1018 | 835 | FunFam | alpha-1,3/1,6-mannosyltransferase ALG2 | 632 | 814 | - | - | |
Cmu07g1018 | 835 | Gene3D | Glycogen Phosphorylase B; | 633 | 829 | - | - | |
Cmu07g1018 | 835 | SUPERFAMILY | Tubby C-terminal domain-like | 107 | 384 | IPR025659 | - | |
Cmu07g1018 | 835 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 436 | 826 | - | - | |
Cmu07g1018 | 835 | Pfam | Glycosyl transferases group 1 | 635 | 807 | IPR001296 | GO:0016757(InterPro) | |
Cmu07g1018 | 835 | Pfam | Tub family | 117 | 380 | IPR000007 | - | |
Cmu07g1018 | 835 | FunFam | alpha-1,3/1,6-mannosyltransferase ALG2 | 433 | 631 | - | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 363 | 385 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 342 | 361 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 313 | 329 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 295 | 312 | IPR000007 | - | |
Cmu07g1018 | 835 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Cmu07g1018 | 835 | MobiDBLite | consensus disorder prediction | 205 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g1018 | Cmu-Chr7:24918032 | Cmu08g0647 | Cmu-Chr8:18687510 | 2.00E-98 | dispersed | |
Cmu07g1018 | Cmu-Chr7:24918032 | Cmu05g0635 | Cmu-Chr5:5459149 | 3.90E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6541 | PF01167 | Tub | 1.20E-102 | CL0395 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu07g1018 | K03843 | - | csv:101211733 | 767.689 |