Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1057 ATGAACATGAAATGGACCAACGTCATCGATTTGTTGGTTGAAAAAATGAAGGCAGCTATTTGGTTTAAGGCTACGAATTCTCTCAGCTCACCTTCTAAGATTTCAGTATTTAAAAGGGTAAAACCCCCAACAAGAAGTTTGGTCGATGAAGAAGAATTTTCGAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACCGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGAGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTCGCCCAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGCCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCGAGCAACATTCTTCTTGATCATGACCTCTCTCCTAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCGATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTTGGAGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACAAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTTGATTTGTCCTTAAATGGCGACTTCGATGCAGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACACAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACAGGAGAGATGAGTATTGAAGACAGAAAGATAACGAAACCGGGGCTGATTTCGGACTTCATGGATCTAAAAGTAAAGAATCCAGAGGAAAAGAAAGGGAATAGAGAGGGGGTGTCTTCTGATAGTCTATCCTCTGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACATCTACAACCTTCACTGCACAATATGACAGGAATACTTTCTCATCTGTAATGTGA 1278 40.61 MNMKWTNVIDLLVEKMKAAIWFKATNSLSSPSKISVFKRVKPPTRSLVDEEEFSSMQNVKFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLKDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDLSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLISDFMDLKVKNPEEKKGNREGVSSDSLSSGSNILGNSTMSSEASTVTSTTFTAQYDRNTFSSVM 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25472242 25476548 - CmPI595203_07g010570.1 Cmu07g1057 420608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1057 425 SMART serkin_6 74 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1057 425 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Cmu07g1057 425 Pfam Protein kinase domain 76 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1057 425 MobiDBLite consensus disorder prediction 373 409 - -
Cmu07g1057 425 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524(InterPro)
Cmu07g1057 425 MobiDBLite consensus disorder prediction 383 409 - -
Cmu07g1057 425 CDD STKc_IRAK 80 347 - -
Cmu07g1057 425 FunFam cold-responsive protein kinase 1 150 361 - -
Cmu07g1057 425 FunFam cold-responsive protein kinase 1 45 149 - -
Cmu07g1057 425 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Cmu07g1057 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1057 425 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 42 381 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cmu07g1057 425 Gene3D Transferase(Phosphotransferase) domain 1 150 359 - -
Cmu07g1057 425 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0928 Cmu-Chr4:23740733 Cmu07g1057 Cmu-Chr7:25472242 6.00E-100 dispersed
Cmu07g1057 Cmu-Chr7:25472242 Cmu10g2905 Cmu-Chr10:35423622 2.40E-92 dispersed
Cmu07g1057 Cmu-Chr7:25472242 Cmu07g1022 Cmu-Chr7:24961755 4.50E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75667 PF00069 Pkinase 3.70E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1057 - - - 0.0