Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1077 ATGCTTCGCAGCTTAATTCCTCATTCCCCCATCAATTCCACCTCCAATTCCCCATCCTCCATGAACTCCAAACGCTCCGACCCCGACTCCTCCCCCGACCACCCTTCTTCCAAGAGGCTCAATTCACGTCCCAACAACTTCTCCGCCCCCGGTAAGGCCGTCCCCCACCCAGACTTCGACGAAGACCAAGAGGACCCACCTCTCGTCGACGGCAGTGACTCCACTGGTTTGAGATTGCTAGGGCTTCTCCTTCAATGCGCCGAGTGCGTCGCCATCGATAATCTCCAGGAGGCCAACGATCTCTTGCCGGAGATCTCCGAGCTCTCCTCGCCCTTCGGAACCTCGCCTGAGCGAGTCGGCGCGTACTTCTCCCACGCGCTTCAAGCCAGAGTTATAAGCTCCTGTTTGGGAACATACTCGCCGTTAACCATCAGAACGTTGAATCAAACTCAGTCGCAGAGAATTTTCAACGCCCTCCAATCCTACAATTCCATCAGTCCGTTGATTAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGTGAAGATCGAGTCCACGTGATCGACCTCGACGTAATGCAAGGTCTCCAATGGCCTGGATTGTTCCACATCCTCGCTTCCCGGCCAAAGAAGATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGAGTTGCTTCAATCAACCGGAAGAAGACTGGCGGATTTTGCAACTTCTCTAGGTCTCCCCTTCGAATTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACAAACCCCAATCAACTGGAATTGAGAGCCGGCGAGACAGTTGTAGTTCACTGGATGCACCATTGCTTATACGACGTAACAGGAAGCGATATAGGTACGCTTAGATTACTTTCAAATCTAAAACCAAAACTAATCACCATTGTTGAACAAGATCTGAGTCATGGAGGTAGTTTTTTAGGAAGATTTGTAGAGGCTCTTCATTATTACAGCGCGTTATTCGACGCGCTTGGTGATAGTTTAACCATGGATAATCTGGAAAGACATGTGGTAGAGCAACAATTGTTTGGTTGTGAGATTAGGAACATTATCGCCGTTGGTGGACCCAAAAGAACCGGTGAAGTTAAAGTCGAAAGATGGGGCGATGAACTGAAACGGGTCGGGTTTAAACCCGTTTCTCTTGGAGGTAACCCGGCTGCTCAAGCCAGTTTACTTCTTGGAATGTTTCCTTGGAAAGGCTATACTCTTGTTGAAGAAAATGGGTGCCTTAAACTTGGATGGAAGGACTTATCTCTTCTCACAGCCTCCGCCTGGCAGCCCTCCGATTGA 1332 49.92 MLRSLIPHSPINSTSNSPSSMNSKRSDPDSSPDHPSSKRLNSRPNNFSAPGKAVPHPDFDEDQEDPPLVDGSDSTGLRLLGLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFSHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSELLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPNQLELRAGETVVVHWMHHCLYDVTGSDIGTLRLLSNLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLTMDNLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFKPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25689386 25690717 + CmPI595203_07g010770.1 Cmu07g1077 420628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1077 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 439 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Cmu07g1077 443 MobiDBLite consensus disorder prediction 7 26 - -
Cmu07g1077 443 Pfam GRAS domain family 81 440 IPR005202 -
Cmu07g1077 443 ProSiteProfiles GRAS family profile. 70 440 IPR005202 -
Cmu07g1077 443 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0555 Cmu-Chr4:18938172 Cmu07g1077 Cmu-Chr7:25689386 4.00E-134 dispersed
Cmu07g1077 Cmu-Chr7:25689386 Cmu09g0784 Cmu-Chr9:7533809 1.30E-88 dispersed
Cmu07g1077 Cmu-Chr7:25689386 Cmu10g2833 Cmu-Chr10:34841085 1.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6544 PF03514 GRAS 3.20E-116 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1077 K27742 - csv:101212169 739.184