Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1101 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGCATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTAAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTAATTTATCAGACAGACCTGCGAGAGGTGTGGGTGGTGAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGGTCTGCTAATTTTAGATTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACTCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGTGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGATAGATTTGTTTGTTTACTAG 1929 44.27 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDAWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPNLSDRPARGVGGEDETQQGRDLLPASLASETHTQCYGDRSANFRLNTQPSGPSDNLQDNQSVSSTHDMAGSCDNSRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGIDLFVY 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26067387 26072647 - CmPI595203_07g011010.1 Cmu07g1101 420652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1101 642 MobiDBLite consensus disorder prediction 321 372 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 181 198 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 277 293 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 161 180 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 345 372 - -
Cmu07g1101 642 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 582 - -
Cmu07g1101 642 SUPERFAMILY RING/U-box 509 580 - -
Cmu07g1101 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Cmu07g1101 642 Pfam Ring finger domain 530 573 IPR001841 -
Cmu07g1101 642 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 49 65 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 1 79 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 224 293 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 224 254 - -
Cmu07g1101 642 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Cmu07g1101 642 SMART ring_2 531 572 IPR001841 -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 330 344 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 1 18 - -
Cmu07g1101 642 MobiDBLite consensus disorder prediction 161 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1992 Cmu-Chr1:33171004 Cmu07g1101 Cmu-Chr7:26067387 2.40E-08 dispersed
Cmu06g1251 Cmu-Chr6:23688927 Cmu07g1101 Cmu-Chr7:26067387 2.70E-40 dispersed
Cmu07g1101 Cmu-Chr7:26067387 Cmu09g1127 Cmu-Chr9:11799712 4.60E-10 dispersed
Cmu07g1101 Cmu-Chr7:26067387 Cmu01g1514 Cmu-Chr1:28717636 2.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1101 - - - 0.0