Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1116 ATGGGGCAGTCGGTCACACGCTTGAAAACATCCCTCTTCGCACGTGCCACAGCGCCTCTTCAGTCTCACTCCAACGCCTCTCTGTCGAATATTCCACATGCTCTCAGACTCTCGCCCTCACTCTCTCTCTCTCTCTCTAGAAGCAAGCTCCAAACTCAGCCTCTCGGTGAGATAGATTTTGCCAAACCTCTCACGGACCGACCATTTTCTTTCTCTCTTCCACCTCTCTCTTTTACTCACCTGCATTTCTCTCCAATTGGATCTAAGATCGTATTGCAGGTTCTGTTTTGTTTCTTCTGGTTTGAGCAGTTTCGGGTGGAGAGTGGTTGTAGTTCTGGTGCGCTACTGCATCTATTGAATACTATGATATTTAAGTCTTGTTTGGCCGAGGAAGAGTCGTTAAATGATTTGAGAGCCACCATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTATGACAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTTGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGCGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATTGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGACGAGGCCCTTCATGAAAGATCTGAGCAATTGGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGACGATAAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTGCAGTCGGAAACTCTTGATGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACTCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 2208 43.66 MGQSVTRLKTSLFARATAPLQSHSNASLSNIPHALRLSPSLSLSLSRSKLQTQPLGEIDFAKPLTDRPFSFSLPPLSFTHLHFSPIGSKIVLQVLFCFFWFEQFRVESGCSSGALLHLLNTMIFKSCLAEEESLNDLRATMGICLVKCSGLLVLHVLLLCMTMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26195527 26208459 + CmPI595203_07g011160.1 Cmu07g1116 420667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1116 735 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 526 728 - -
Cmu07g1116 735 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515(InterPro)
Cmu07g1116 735 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 169 331 - -
Cmu07g1116 735 SMART serkin_6 450 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1116 735 Pfam Protein kinase domain 452 715 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1116 735 Gene3D Phosphorylase Kinase; domain 1 426 525 - -
Cmu07g1116 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1116 735 Pfam Leucine rich repeat N-terminal domain 171 209 IPR013210 -
Cmu07g1116 735 Gene3D Ribonuclease Inhibitor 170 356 IPR032675 -
Cmu07g1116 735 ProSiteProfiles Protein kinase domain profile. 450 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1116 735 SUPERFAMILY Protein kinase-like (PK-like) 434 717 IPR011009 -
Cmu07g1116 735 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 424 525 - -
Cmu07g1116 735 SUPERFAMILY L domain-like 170 333 - -
Cmu07g1116 735 ProSitePatterns Protein kinases ATP-binding region signature. 456 478 IPR017441 GO:0005524(InterPro)
Cmu07g1116 735 Gene3D Transferase(Phosphotransferase) domain 1 526 724 - -
Cmu07g1116 735 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 301 719 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1116 Cmu-Chr7:26195527 Cmu11g1620 Cmu-Chr11:28478157 1.20E-227 dispersed
Cmu11g1490 Cmu-Chr11:27233589 Cmu07g1116 Cmu-Chr7:26195527 7.90E-54 dispersed
Cmu07g1116 Cmu-Chr7:26195527 Cmu01g1403 Cmu-Chr1:27552775 2.40E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75669 PF00069 Pkinase 4.00E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1116 - - - 0.0