Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1123 ATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAATCAACTCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTCGCTTCCAATCCCATGTCCCCTTTTCTTCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGGCTTCTCTGAAGCTGATGACGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCCGTACCGCAAAAGCTGACCGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTACTGCCATCGGAGAATCCTGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCTGGGCAACCATTCGTCCTTGATTCGCAGAGCAATGGACTTCATCAGTATCGGATGGCCTCTTTGACGTTTATGTTTTCCTTGGACCCTGACCAGGACGGATATCTTGGGCTTCCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCGCGACTTAGTCATGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCCGGGCACTCTTGTCTTGGTGTTCTAGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTCGAGGCTGTCAATCTAAAAAGTTCAGAAATTTTGGATCATCCGAATAATCAGATTTGCAATGAAGGTCGTCAGAATGCATTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAACTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCTGCGACTGAAGTAGCATCGTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCAATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCATCTGGAATCAACCTTGAGGACAAGGAAGGACTTGTCGAGATCATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGACTTGAATATATTCAAATTCCGCGACCCATGGAATTGGCACCTGTATCTGATGACATACCAAAAGCAGTGGAGGTAGTTGCACTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCCCCGAAGGATGAAAACAATAGTGCTCGGGATGGGGAAAGCCACAACCCCATTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACGTCTGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCCAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCCTCTCGGAAGATCAACAAGGTCAATCGCTCACTTTCAAAGCTGAAGCGCGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTTGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTACAGTTAGCTCAAGTTCTCATCCTTTAACTCCCGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCAATTGCATAGAGTGTTGAGTCCAGAGGAACCAATTCACGAACAGAATGGATATCTGCCGAAGTTTGGAAATGGTTTGAACAATTTTAGAACAGGGAGTGGATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGATAGTGCACTAGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATTCAATCGATAAACTGAATATATCCGCACCTGCTTGTCCAATCTCGGATGCGATCGTGATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCGAAGGACTTGAAAAATCTTTGTGCTTCTGTCGCTGATGCGGTTCTTGACGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTCCTGATATGGCTCTGAGACAACCTATGGACTCTATTTGTCACACAGTTCCCCATATATCACTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGAGTTCTGGTATTGTGGAGTTGAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCGTGCGATGCAGACCTACAAGAGTGTGTAGATATTTCAAAGTCGTCAGGTAGCAATATAATAAGATTGTCGGTTCATGATTTAAATGTCCATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 2976 44.32 MTEPDSDHPSPLFPKSTHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWGFSEADDDDDSKFAAYACSVLGTSNSHSVPQKLTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKNCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASGINLEDKEGLVEIIQASRNGGFESRLEYIQIPRPMELAPVSDDIPKAVEVVALETLQQQSLMVHDAPKDENNSARDGESHNPIPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRVLSPEEPIHEQNGYLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVAFHSIDKLNISAPACPISDAIVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPPDMALRQPMDSICHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDLNVHLGSSCESTGE 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26279345 26283336 - CmPI595203_07g011230.1 Cmu07g1123 420674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1123 991 MobiDBLite consensus disorder prediction 673 715 - -
Cmu07g1123 991 Pfam NLP protein GAF domain 300 483 IPR055081 -
Cmu07g1123 991 MobiDBLite consensus disorder prediction 548 590 - -
Cmu07g1123 991 FunFam RWP-RK domain-containing protein 893 977 - -
Cmu07g1123 991 PANTHER PROTEIN NLP8 65 990 IPR045012 GO:0003700(InterPro)
Cmu07g1123 991 MobiDBLite consensus disorder prediction 747 783 - -
Cmu07g1123 991 SMART PB1_new 896 978 IPR000270 GO:0005515(InterPro)
Cmu07g1123 991 Pfam PB1 domain 897 977 IPR000270 GO:0005515(InterPro)
Cmu07g1123 991 Pfam RWP-RK domain 592 639 IPR003035 -
Cmu07g1123 991 MobiDBLite consensus disorder prediction 731 783 - -
Cmu07g1123 991 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Cmu07g1123 991 ProSiteProfiles PB1 domain profile. 896 978 IPR053793 -
Cmu07g1123 991 CDD PB1_NLP 897 977 IPR034891 -
Cmu07g1123 991 SUPERFAMILY CAD & PB1 domains 890 979 - -
Cmu07g1123 991 MobiDBLite consensus disorder prediction 1 25 - -
Cmu07g1123 991 Gene3D - 894 977 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1123 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1123 Cmu-Chr7:26279345 Cmu07g1147 Cmu-Chr7:26619289 8.70E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g1123 . 186 991 NLP Transcription Factor Family AT1G64530 52.3 9.3e-219 756.9
Cmu07g1123 . 265 991 NLP Transcription Factor Family AT4G24020 55.2 3.6e-199 691.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6549 PF00564 PB1 7.60E-19 CL0072 Cmu TF