Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1130 ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAGTATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTAGACCTTACCACATTGGAGGGGTATGGCCAACTTATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2094 46.51 MANRGGGSFLPSSIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26415172 26418750 - CmPI595203_07g011300.1 Cmu07g1130 420681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1130 697 Pfam AUX/IAA family 576 622 IPR033389 -
Cmu07g1130 697 Pfam AUX/IAA family 633 669 IPR033389 -
Cmu07g1130 697 MobiDBLite consensus disorder prediction 574 590 - -
Cmu07g1130 697 MobiDBLite consensus disorder prediction 365 384 - -
Cmu07g1130 697 FunFam Auxin response factor 127 231 - -
Cmu07g1130 697 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Cmu07g1130 697 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu07g1130 697 Gene3D - 126 230 IPR015300 -
Cmu07g1130 697 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Cmu07g1130 697 SUPERFAMILY DNA-binding pseudobarrel domain 116 258 IPR015300 -
Cmu07g1130 697 SUPERFAMILY CAD & PB1 domains 580 662 - -
Cmu07g1130 697 Gene3D - 581 673 - -
Cmu07g1130 697 MobiDBLite consensus disorder prediction 527 590 - -
Cmu07g1130 697 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Cmu07g1130 697 FunFam Auxin response factor 290 361 - -
Cmu07g1130 697 MobiDBLite consensus disorder prediction 483 511 - -
Cmu07g1130 697 Gene3D - 290 361 - -
Cmu07g1130 697 ProSiteProfiles PB1 domain profile. 586 667 IPR053793 -
Cmu07g1130 697 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Cmu07g1130 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu07g1130 697 MobiDBLite consensus disorder prediction 429 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0172 Cmu-Chr1:1699592 Cmu07g1130 Cmu-Chr7:26415172 5.40E-223 dispersed
Cmu03g1453 Cmu-Chr3:10257856 Cmu07g1130 Cmu-Chr7:26415172 3.80E-10 dispersed
Cmu07g1130 Cmu-Chr7:26415172 Cmu09g0906 Cmu-Chr9:8976003 2.30E-212 dispersed
Cmu07g1130 Cmu-Chr7:26415172 Cmu02g2094 Cmu-Chr2:34577424 1.30E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6550 PF02362 B3 8.00E-22 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1130 K14486 - csv:101213942 1243.41