Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1139 ATGGTTATGGCCAAAGCTATTCTTGTCACCGGCGGCGCTGGCTACATTGGAAGCCACACTGTTCTTCAGCTCCTTCTCGGCGGTTACCGGACCGTCGTCGTCGATAATTTGGACAATTCCTCTGAAATTGCTGTTCGTCGAGTTAAGGAGCTCGCCGGCGATCTTGGCAAAAACCTTTCGTTTCACAAGCTGGACCTCAGGGACAAACGGGCTTTGGAGAAGGTGTTTGCTTCAACACCATTTGACGCTGTTATTCACTTTGCTGGGCTGAAAGCAGTTGGTGAAAGTGTACAGAAACCATTGCTTTACTATGACAACAACTTAGTTGGAACAATTACTTTATTGGAAGTCATGGCGGCCCATGGGTGTAAAAAGCTTGTCTTCTCATCTTCAGCCACCGTTTATGGTTGGCCGAAGGAGGTACCATGTACAGAAGAATTCCCCCTTTCTGCAGCAAACCCATATGGACGAACCAAGCTTTTCATAGAAGAAATCTGCCGTGACATATACAGTTCAGACTCTGAATGGAAAATCATATTGCTAAGATATTTCAATCCAGTGGGCGCCCACCCCAGTGGCTATATTGGTGAGGATCCCCGTGGAATCCCAAACAACCTCATGCCCTTTGTACAACAAGTTGCTGTCGGCAGGCGTCCTGCCTTGACAGTCTTTGGAACCGACTATTCAACAAAAGATGGAACCGGAGTACGTGATTATATTCATGTTGTTGATTTAGCTGATGGACACATTGCTGCATTGCGCAAGTTAGATGTGGCTGGTATAGGTTGTGAAGTTTACAACTTGGGAACTGGAAAGGGTACATCGGTTTTGGAGATGGTTGCAGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTGATGTCTGAACGCCGACCTGGTGATGCTGAAATTGTCTACGCATCGACTCACAAAGCAGAAAAGGAGTTGAACTGGAAGTATAGCAAAATATGGAATCGACGAGATGTGCAGGGATCAGTGGAACTGGGCCAGCAAGAATCCTTATGGCTACGAATCTCCAAACTCCAACTAATGGACTTGGGAGTACCAGTTGAAAACAAAACTGAAACATGTTGGTTGCTTTTGTTTAGCTCTAAGTCTATTGATTTGGTTCACTTTCTGAGGGCCTGTACGGCGCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTCTGGGACTCCTTGCCGGCTATCGCCGTCGTCGGCGACCTCTTGTCTTGCAACTTCATAAAAGTGACGAAGGAAGCAGAGATTGCTGTCAGGAAGGAAATTCAAGATGAGACTGATCGAGAGACTGGGGAGAGAACTCTTGGTGTGTTGACGAAGATTGATCTCATGGATAAGGGAACAGATGCTGTTGATATATTGGAAGGCAAAGCTTACAGGCTGAAGTTTCCTTGGGTTGGTGTCGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCAGCTAGGCGTAGGGAGCGTGAATATTTTGCTAGCACTCCAGAATACAAGCACCTTGCCCATAGGATGGGCTCTGAGCATCTAGCAAAGGTCCTTTCAAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCTGGCATTCAAAACCTTATTAACAAGACCATTTCAGAACTTGAATCCGAACTAAGCCGTCTTGGAAGGCCTGTTGCAAATGATGCTGGAGGAAAACTATACATGATTATGGAGATTTGTCGTGCTTTTGATCAGAATTTTAAAGAACACCTGGATGGCGTGCGTCCTGGTGGAGATAAAATTTACAATGTCTTTGATGACCAACTTCCTGCTGCGCTTAAGAGGTTACAGTTTGACAGGCAGCTATCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATTGCTCCTGAACAAGGATATCGTCGTCTTATTGAATCTACTTTAGTTACTATTAGAGGCCCAGCTGAGGCATGTGTTGATGCGGTTCATGCCATATTGAAGGATCTGGTTCACAAAGCTATGGGTGAAACTCTAGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGGTAGGAAACGCCGCTATTGAATCCCTGGAACGAATGAGGGAGCAAAGCAAGAAAGCATCACTTCAGCTTGTAGATATGGAGTGCAGTTACCTGACTGTTGATTTCTTCCGGAAGCTACCTCAAGATATTGAAAAGGGAGGCAACCCTACACATTCGATTTTTGACCGATACAATGACTCATATCTAAGGCGTGTCGGAACGACGGTGCTATCTTATGTCCATATGGTTTGTGCAAGCCTACGAAACTCGATTCCAAAGTCCATTGTTTATTGTCAAGTACGAGAGGCCAAAAGAAGCCTCCTCGACCACTTTTTCACCGAGTTGGGAAAACTTGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATAATGGAGCGGCGTTCTGCCCTAGCAAAGAGGCTCGAGTTATACAGAAGTGCACAAGCAGAAATCGACACGGTTGCTTGGTCGAACACAATTCTTTCATTCATACATTGCGGGGAAGAAGGTTTGAGATTTTGGGGATGGGTCCGATGGCTGAAACACACTCAAAAAAGAGGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTAGCAGTGGAAACCTAA 2688 44.9 MVMAKAILVTGGAGYIGSHTVLQLLLGGYRTVVVDNLDNSSEIAVRRVKELAGDLGKNLSFHKLDLRDKRALEKVFASTPFDAVIHFAGLKAVGESVQKPLLYYDNNLVGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTKDGTGVRDYIHVVDLADGHIAALRKLDVAGIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSERRPGDAEIVYASTHKAEKELNWKYSKIWNRRDVQGSVELGQQESLWLRISKLQLMDLGVPVENKTETCWLLLFSSKSIDLVHFLRACTALGDHGEASALPTLWDSLPAIAVVGDLLSCNFIKVTKEAEIAVRKEIQDETDRETGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFASTPEYKHLAHRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAEACVDAVHAILKDLVHKAMGETLELKQYPGLRVEVGNAAIESLERMREQSKKASLQLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDTVAWSNTILSFIHCGEEGLRFWGWVRWLKHTQKRGKQEEEEEEEEEEELAVET 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26493283 26510807 - CmPI595203_07g011390.1 Cmu07g1139 420690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1139 895 Pfam Dynamin central region 459 727 IPR000375 -
Cmu07g1139 895 SMART GED_2 751 844 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu07g1139 895 CDD UDP_G4E_1_SDR_e 6 320 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cmu07g1139 895 Gene3D Dynamin, middle domain 569 824 - -
Cmu07g1139 895 FunFam UDP-glucose 4-epimerase 7 199 - -
Cmu07g1139 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 547 IPR027417 -
Cmu07g1139 895 MobiDBLite consensus disorder prediction 881 895 - -
Cmu07g1139 895 MobiDBLite consensus disorder prediction 875 895 - -
Cmu07g1139 895 Pfam Dynamin GTPase effector domain 752 844 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu07g1139 895 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 322 - GO:0003978(PANTHER)|GO:0005829(PANTHER)|GO:0033499(PANTHER)
Cmu07g1139 895 Coils Coil 703 723 - -
Cmu07g1139 895 Coils Coil 870 890 - -
Cmu07g1139 895 Pfam GDP-mannose 4,6 dehydratase 8 321 IPR016040 -
Cmu07g1139 895 SMART dynamin_3 236 489 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu07g1139 895 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 322 IPR036291 -
Cmu07g1139 895 FunFam Dynamin-related protein 5A 570 824 - -
Cmu07g1139 895 Gene3D - 421 547 IPR027417 -
Cmu07g1139 895 Gene3D - 195 322 - -
Cmu07g1139 895 ProSiteProfiles GED domain profile. 756 849 IPR020850 -
Cmu07g1139 895 NCBIfam UDP-glucose 4-epimerase GalE 6 321 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cmu07g1139 895 Gene3D - 7 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1139 K27686 - - csv:101209311 801.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0166 Cmu-Chr1:1626706 Cmu07g1139 Cmu-Chr7:26493283 4.50E-169 dispersed
Cmu01g0288 Cmu-Chr1:2951283 Cmu07g1139 Cmu-Chr7:26493283 5.80E-124 dispersed
Cmu01g2488 Cmu-Chr1:36750165 Cmu07g1139 Cmu-Chr7:26493283 4.60E-72 dispersed
Cmu07g1139 Cmu-Chr7:26493283 Cmu09g1208 Cmu-Chr9:13798994 1.70E-143 dispersed
Cmu07g1139 Cmu-Chr7:26493283 Cmu05g0306 Cmu-Chr5:2613100 1.40E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g145 Blo02g01152 Blo03g00251 Bda06g00151 Bda08g00463 Bpe05g00696 Bpe07g00067 . . . . Cma02g00928 . Car02g00677 . . Cpe14g00457 . . . . . . . . Cla07g01096 Cam07g1402 Cec07g1259 Cco07g1236 Clacu07g1160 Cmu07g1139 Cre07g1520 . . Cone6ag0856 Cone9ag0858 . . . . . . . . . . Bma05g00878 Bma12g00612 . Cmo02g00937 . . . . . . . . . . . . . . . . . . . . . . Csa04g00666 Chy07g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018168 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5