Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1165 ATGGCCCAAAAGGTTTGTGCTCACCAAAATGGTTCAATGGAGAGCTTGTGCAGCACCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGTCACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGTGCAGAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTCATTCTGGGTTCTTCGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAACGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCCGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATCGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATACTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAATGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAAGTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2142 45.14 MAQKVCAHQNGSMESLCSTHQDPLNWGLAADSMKGSHLDEVKRMVEEYRSPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMCRGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYENGNSKIENQIKDCRSYPLYRFVREELGTSLLSGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26949215 26951356 - CmPI595203_07g011650.1 Cmu07g1165 420716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1165 713 Gene3D - 526 647 IPR023144 -
Cmu07g1165 713 CDD PAL-HAL 58 523 IPR001106 -
Cmu07g1165 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Cmu07g1165 713 PANTHER HISTIDINE AMMONIA-LYASE 16 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu07g1165 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cmu07g1165 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cmu07g1165 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cmu07g1165 713 Gene3D - 14 259 IPR024083 -
Cmu07g1165 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu07g1165 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cmu07g1165 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cmu07g1165 713 FunFam Phenylalanine ammonia-lyase 260 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0946 Cmu-Chr4:23930214 Cmu07g1165 Cmu-Chr7:26949215 0.00E+00 dispersed
Cmu04g0947 Cmu-Chr4:23935173 Cmu07g1165 Cmu-Chr7:26949215 0.00E+00 dispersed
Cmu07g1165 Cmu-Chr7:26949215 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 dispersed
Cmu07g1165 Cmu-Chr7:26949215 Cmu07g1166 Cmu-Chr7:26953068 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1165 K10775 - csv:101204574 1355.5