Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1166 ATGGCTTCCAAAAATAATGATTCATTACACAGCTTCTGCACCAGCAGTCAGGATCCACTCAACTGGGGTGTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGACACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGTGCAGAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTCATTCTGGGTTCTTCGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAACGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCCGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATCGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATACTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAAGTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2130 45.02 MASKNNDSLHSFCTSSQDPLNWGVAADSMKGSHLDEVKRMVEEYRTPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMCRGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDCRSYPLYRFVREELGTSLLSGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26953068 26955197 + CmPI595203_07g011660.1 Cmu07g1166 420717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1166 709 Gene3D - 522 643 IPR023144 -
Cmu07g1166 709 FunFam Phenylalanine ammonia-lyase 9 255 - -
Cmu07g1166 709 Pfam Aromatic amino acid lyase 56 534 IPR001106 -
Cmu07g1166 709 PANTHER HISTIDINE AMMONIA-LYASE 15 709 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu07g1166 709 CDD PAL-HAL 54 519 IPR001106 -
Cmu07g1166 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 191 207 IPR022313 GO:0016841(InterPro)
Cmu07g1166 709 Gene3D Fumarase/aspartase (Central domain) 256 704 - -
Cmu07g1166 709 FunFam Phenylalanine ammonia-lyase 256 560 - -
Cmu07g1166 709 Gene3D - 10 255 IPR024083 -
Cmu07g1166 709 FunFam Phenylalanine ammonia-lyase 522 643 - -
Cmu07g1166 709 SUPERFAMILY L-aspartase-like 18 709 IPR008948 GO:0003824(InterPro)
Cmu07g1166 709 NCBIfam phenylalanine ammonia-lyase 18 699 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0948 Cmu-Chr4:23939418 Cmu07g1166 Cmu-Chr7:26953068 0.00E+00 dispersed
Cmu04g0949 Cmu-Chr4:23944272 Cmu07g1166 Cmu-Chr7:26953068 0.00E+00 dispersed
Cmu07g1166 Cmu-Chr7:26953068 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 dispersed
Cmu07g1165 Cmu-Chr7:26949215 Cmu07g1166 Cmu-Chr7:26953068 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1166 K10775 - csv:116401606 1328.15