Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1193 ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCTAATTCTCAACTGGGTTTGGATCTGAGCCTTTCTAATAAAGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAACAACAGAACCTACAGATACAGAAACAGAGCCCAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCCCACAAGCGAGAGAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTCGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTCAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTTCTCTTCATGTTTCTGCAATTGGGTCATCTGGAATTTATGGTCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTTAGAGGCATTTCGTCGAACACCGGAGCTGCAAGGTTTCAGGGTGTGAAGAAATTCTCTCCGGCGGCAGACACGGAGGCGCCACCGCCTCTCGGAGGGTTCTGGTGGGATGGCGGCGGTGGTGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 801 47.94 MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNKDSDHGSNPELNLIDCFDVNLTTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFQGVKKFSPAADTEAPPPLGGFWWDGGGGGGFSHLKMKPKQDELLKLDLSLKL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27256074 27256874 + CmPI595203_07g011930.1 Cmu07g1193 420744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1193 266 FunFam Zinc finger protein 2 67 131 - -
Cmu07g1193 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 266 IPR044246 GO:0009788(InterPro)
Cmu07g1193 266 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cmu07g1193 266 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Cmu07g1193 266 MobiDBLite consensus disorder prediction 8 22 - -
Cmu07g1193 266 Gene3D Classic Zinc Finger 66 130 - -
Cmu07g1193 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Cmu07g1193 266 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1145 Cmu-Chr5:10902709 Cmu07g1193 Cmu-Chr7:27256074 2.00E-20 dispersed
Cmu05g1158 Cmu-Chr5:11115853 Cmu07g1193 Cmu-Chr7:27256074 6.20E-25 dispersed
Cmu05g1683 Cmu-Chr5:26906268 Cmu07g1193 Cmu-Chr7:27256074 3.40E-23 dispersed
Cmu07g1193 Cmu-Chr7:27256074 Cmu08g1302 Cmu-Chr8:25272248 6.30E-30 dispersed
Cmu06g1389 Cmu-Chr6:25051502 Cmu07g1193 Cmu-Chr7:27256074 3.90E-13 transposed
Cmu07g0224 Cmu-Chr7:2247960 Cmu07g1193 Cmu-Chr7:27256074 9.40E-11 transposed
Cmu10g2377 Cmu-Chr10:30195499 Cmu07g1193 Cmu-Chr7:27256074 5.90E-15 transposed
Cmu11g1312 Cmu-Chr11:25336021 Cmu07g1193 Cmu-Chr7:27256074 1.10E-17 transposed
Cmu07g1193 Cmu-Chr7:27256074 Cmu09g0311 Cmu-Chr9:2963227 1.10E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6556 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1193 - - - 0.0