Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1223 ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAGTGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG 531 52.17 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHSAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27538320 27539673 - CmPI595203_07g012230.1 Cmu07g1223 420774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1223 176 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677(InterPro)
Cmu07g1223 176 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 106 IPR050913 -
Cmu07g1223 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1223 176 FunFam Ethylene-responsive transcription factor 2 6 64 - -
Cmu07g1223 176 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1223 Cmu-Chr7:27538320 Cmu08g1298 Cmu-Chr8:25240078 2.40E-38 dispersed
Cmu05g1687 Cmu-Chr5:26947181 Cmu07g1223 Cmu-Chr7:27538320 1.50E-38 wgd
Cmu07g1223 Cmu-Chr7:27538320 Cmu08g1297 Cmu-Chr8:25232813 3.20E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6559 PF00847 AP2 4.00E-11 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1223 - - - 0.0