Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1225 ATGGCCCTTCGCCCTTTCTTCTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAGGAATTACACTCGGCCACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATAGCAGTTAAAAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTTTCTGTGGAAGTTGAAATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGCTTGATTGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCAGAATGCCATCTTGATTGGAAACGTCGTATGAAAATCGCTATTGGGTCTGCCGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTGCTGGATCCAGATTTCCAAGCTCGAGTAGCTGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTTGCTCCTGAATATGCTATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGTTTTGGCATTCTCCTGCTTGAGCTTGCTACCGGCAAGAAGCCTCTTGAGAAATTGAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAAAATTGACGAACTTGCAGACCCGAAGCTAAATGGAGACTATAACGCAGACGAACTAAAGAGAGTCGTCCTTGTTGCGCTCTGTTGTTCCCATTCACGACCTGAGAAACGACCGACCATGCTCGAGGTGGTTGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTGGCCAAATTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGGATTCAAAAGAGAAGGAGAAAGAGAATTCATCACAAAACCCCACATGA 1110 44.14 MALRPFFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIIDWALPIVVEKKIDELADPKLNGDYNADELKRVVLVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEIQAGEDSSDFISEEKDSKEKEKENSSQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27553333 27556301 - CmPI595203_07g012250.1 Cmu07g1225 420776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1225 369 CDD STKc_IRAK 46 313 - -
Cmu07g1225 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Cmu07g1225 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Cmu07g1225 369 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Cmu07g1225 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Cmu07g1225 369 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Cmu07g1225 369 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1225 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1225 369 PANTHER OS01G0750732 PROTEIN 22 349 IPR050885 -
Cmu07g1225 369 Coils Coil 305 325 - -
Cmu07g1225 369 MobiDBLite consensus disorder prediction 347 369 - -
Cmu07g1225 369 MobiDBLite consensus disorder prediction 335 369 - -
Cmu07g1225 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1225 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Cmu07g1225 369 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1019 Cmu-Chr3:4758811 Cmu07g1225 Cmu-Chr7:27553333 7.60E-57 dispersed
Cmu06g1363 Cmu-Chr6:24834701 Cmu07g1225 Cmu-Chr7:27553333 1.20E-114 dispersed
Cmu07g1225 Cmu-Chr7:27553333 Cmu11g0233 Cmu-Chr11:2800321 1.70E-78 dispersed
Cmu10g2939 Cmu-Chr10:35695123 Cmu07g1225 Cmu-Chr7:27553333 8.90E-65 dispersed
Cmu10g2940 Cmu-Chr10:35699994 Cmu07g1225 Cmu-Chr7:27553333 2.10E-66 dispersed
Cmu07g1225 Cmu-Chr7:27553333 Cmu05g0864 Cmu-Chr5:7859750 8.80E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75671 PF00069 Pkinase 7.10E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1225 - - - 0.0