Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1245 ATGGCGCATATTTTGCTTCATGGTACCCTTCATGTCACCATTTATGAAGTGGATAAGCTTCATTCTGGTGGTCGCAATTTCTTGAAACAGTTGGTTGAAAACGTAGAGGAGGCAGTTGGGTTTGGTCGAGGAGTAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAGAAAGAACATTCAAACCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATTGGCAGAGCATATTTGCCTGTTCGAGAGATCATACATGGTGAAGAAGTTGACAAATGGGTTCCAATCTTAGATGAACGTAAGAATCCCATTCGTGGGGAGCCCAAAATTCATGTCAAATTACAGTATTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCTCAAGTTTCCTGGCGTTCCCTACACTTATTTCTCCCAAAGACAAGGTTGTAAGGTAACTTTGTATCAAGATGCTCATGTTCCAGACAACTTTATCCCGAAAATCCCTCTTGCTGGAGGCAAGTTTTATGAGCCACATCGATGCTGGGAAGATATTTTTGATGCAATTACTAATGCTAAACACTTGATTTATATTTCTGGATGGTCTGTTTACACCGAGATTTCTTTGGTGAGAGATAGAAGAAGGCCAAAGCCTGGTGGAGATATAATGCTCGGCGAATTGCTTAAGAAAAAGGCTGGGGAAGGAGTTAGAGTTCTTTTGCTTATTTGGAATGATACAACTTCTGTTCCTATATTGAAGGAGGAGGGCTTAATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTCCATTGTGTTTTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAAGACATTGCTGTTGGGACAATGTTCACTCACCATCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCTAACAGAAGGAGAATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGGTATGATACCCCATTTCATTCCCTTTTCAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCGAACTTCGCTGGTACTTCCATAAACAAAGGTGGTCCTAGAGAGCCGTGGCACGACATCCATTCCCGCCTCGAAGGACCTGTTGCATGGGATGTTTTGTACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTGTGAAATTGAGGGATTTAGATGAGATCTTCATCACTCCATCACCTGTCACGTTCCCTGATGACATCGACAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTCGGTTTCCCCGACTCGCCTGAAGAAGCAGCAAAAGCAGGGCTGATAAGTGGAAAGGACAACACCATTGACCGAAGTATTCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATAGAAAATCAGTATTTCCTTGGAAGCTCGTTTGACTGGAGAGGTGATGATGTGAAGCCTGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTAGAGAGAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAAGCAATATTGGACTGGCAAAGGAGGACAATGGAAATGATGTATAAGGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTAACTTTCTTTTGTGTTGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAGCCATCAGAATCACCTGAAGAAAATTCTGATTACCTTAGAGCCCAGAAATCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGTGGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGATTCAGAGATAGCAATGGGAGGTTACCAGCCATATCATTTATCAACTAGAGAGCCAGCACGAGGCCAAATCCATGGCTTCCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTGTTCCCAGAAAGTGTTGAATGTGTTAAAAGAGTAAACCAACTTGCTGAAAAATATTGGGATTTATACTCAAGTGAGAGCTTTGAACATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCCATCTCCGCTGACGGTGAAGTTACCGAGCTTCCGGGGTTCGAATACTTCCCCGACACCAAGGCGCGAGTTTTAGGTAACAAATCTAACTACCTCCCTCCAATCCTCACTACTTGA 2424 42.74 MAHILLHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSLKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDIFDAITNAKHLIYISGWSVYTEISLVRDRRRPKPGGDIMLGELLKKKAGEGVRVLLLIWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRDLDEIFITPSPVTFPDDIDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWRGDDVKPEMINALHLIPKELSLKIVSKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPEENSDYLRAQKSRRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTREPARGQIHGFRLALWYEHLGLLHQSFLFPESVECVKRVNQLAEKYWDLYSSESFEHDLPGHLLRYPIAISADGEVTELPGFEYFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27763065 27766985 - CmPI595203_07g012450.1 Cmu07g1245 420796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1245 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 Pfam Phospholipase D Active site motif 655 680 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 Gene3D Endonuclease Chain A 200 440 - -
Cmu07g1245 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Cmu07g1245 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Cmu07g1245 807 Pfam C2 domain 10 125 IPR000008 -
Cmu07g1245 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Cmu07g1245 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cmu07g1245 807 FunFam Phospholipase D 466 699 - -
Cmu07g1245 807 PANTHER PHOSPHOLIPASE D 5 794 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cmu07g1245 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cmu07g1245 807 SMART C2_3c 9 123 IPR000008 -
Cmu07g1245 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Cmu07g1245 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 Gene3D Endonuclease Chain A 475 696 - -
Cmu07g1245 807 FunFam Phospholipase D delta 200 443 - -
Cmu07g1245 807 SMART pld_4 325 363 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 SMART pld_4 653 680 IPR001736 GO:0003824(InterPro)
Cmu07g1245 807 Gene3D C2 domain 6 157 IPR035892 -
Cmu07g1245 807 CDD C2_plant_PLD 2 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1245 Cmu-Chr7:27763065 Cmu10g1179 Cmu-Chr10:4447374 4.00E-197 dispersed
Cmu07g1343 Cmu-Chr7:28723195 Cmu07g1245 Cmu-Chr7:27763065 7.70E-174 transposed
Cmu07g1245 Cmu-Chr7:27763065 Cmu08g1270 Cmu-Chr8:25028518 0.00E+00 wgd
Cmu07g1245 Cmu-Chr7:27763065 Cmu09g0265 Cmu-Chr9:2664199 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1245 K01115 - csv:101215246 1599.72