Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1247 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCCGCCGTTCTCATGAGTGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACTGCCCTGGTTCAAAACGATGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCAGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCAAGTAACGGACGAGTCGCCGAAAAAGGGTGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA 564 48.94 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVQNDARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFQVTDESPKKGAEDQVRLSDGAESLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27783552 27784390 + CmPI595203_07g012470.1 Cmu07g1247 420798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1247 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cmu07g1247 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 MobiDBLite consensus disorder prediction 143 167 - -
Cmu07g1247 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cmu07g1247 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 129 IPR050913 -
Cmu07g1247 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu07g1247 187 Coils Coil 166 186 - -
Cmu07g1247 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1725 Cmu-Chr5:27415672 Cmu07g1247 Cmu-Chr7:27783552 3.30E-49 dispersed
Cmu06g1175 Cmu-Chr6:22567054 Cmu07g1247 Cmu-Chr7:27783552 1.30E-44 dispersed
Cmu07g1247 Cmu-Chr7:27783552 Cmu08g1297 Cmu-Chr8:25232813 2.30E-26 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu07g1247 Cmu-Chr7:27783552 7.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6560 PF00847 AP2 4.60E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1247 - - - 0.0