Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1290 ATGGGTGCCGACATGTCCAACAATAATAATACTAATCGCCTTGCTTTTACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGATGGACCATGGGTGTCCTGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAACTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCAAAAGCAGCGGCGTCTCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAATTTTTGGGGTTGAAAAGTCCAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACAGTCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCATTGGTAAAATACAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAATTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCTCAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAGCCCATTGGAGTCATCTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGCGTTCTACTCACCGCGGCGGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATTGAGTACGTTAAAAGCATCATTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2316 45.98 MGADMSNNNNTNRLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGMDHGCPVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPKAAASPSYSSGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATVGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSIGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSAKPTMESIEYVKSIICCTLKNIRTSMCCEDD 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28178418 28186936 - CmPI595203_07g012900.1 Cmu07g1290 420841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1290 771 MobiDBLite consensus disorder prediction 39 65 - -
Cmu07g1290 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 768 IPR042160 -
Cmu07g1290 771 SMART START_1 275 506 IPR002913 GO:0008289(InterPro)
Cmu07g1290 771 FunFam Homeobox-leucine zipper protein GLABRA 2 276 505 - -
Cmu07g1290 771 MobiDBLite consensus disorder prediction 39 112 - -
Cmu07g1290 771 Coils Coil 161 188 - -
Cmu07g1290 771 SUPERFAMILY Bet v1-like 529 703 - -
Cmu07g1290 771 ProSiteProfiles START domain profile. 267 509 IPR002913 GO:0008289(InterPro)
Cmu07g1290 771 Coils Coil 213 233 - -
Cmu07g1290 771 Pfam Homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cmu07g1290 771 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Cmu07g1290 771 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Cmu07g1290 771 MobiDBLite consensus disorder prediction 74 101 - -
Cmu07g1290 771 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu07g1290 771 CDD homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cmu07g1290 771 Pfam START domain 279 506 IPR002913 GO:0008289(InterPro)
Cmu07g1290 771 SUPERFAMILY Homeodomain-like 92 163 IPR009057 -
Cmu07g1290 771 Gene3D - 278 505 IPR023393 -
Cmu07g1290 771 SUPERFAMILY Bet v1-like 270 507 - -
Cmu07g1290 771 Gene3D - 92 175 - -
Cmu07g1290 771 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Cmu07g1290 771 CDD START_ArGLABRA2_like 271 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0005 Cmu-Chr6:97544 Cmu07g1290 Cmu-Chr7:28178418 5.00E-150 dispersed
Cmu07g1290 Cmu-Chr7:28178418 Cmu09g1115 Cmu-Chr9:11577959 3.50E-121 dispersed
Cmu07g1290 Cmu-Chr7:28178418 Cmu09g0186 Cmu-Chr9:2022799 4.40E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6563 PF01852 START 1.10E-54 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1290 K09338 - csv:101221341 1313.52