Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1311 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCAGTTTGTTCTTCCTTCTATACTTCGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTATCCCACGCCCTTGAATTGTACGGACACAACCCGTTTATGTACCTCGTTTTTGGCCTTCAAGCCTCAGCCAAATCAGACACTTTCTGTGATCCAGAGCATGTTCGACGTATTGCCTGAAGATGTAACTGTGGAAGGCAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGTTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACCATCAAATCCAATCACGGTCATGTATATGATATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTGCCCAACACAACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGACACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGCAATGTCACGGTGGGTGCTTTGTATTATGTTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCGTTGGAGACAGACATTTCTCCTGCTCCTACTCCAGCTCCTTCCTATACTCAGAACAATTTCTCAGATAATGCTCAGAACCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAGTGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTAGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCTGATTGGAAGCAAGCCAATGGGGAATCTACCGACAACCAGAGTGCAATTCCAAAAGCTATCGAGAGTAATGTATTTGATGTAGACAAACCTGTGGTTTTTTCATGCGAAGAAATTTTTTCCTCAACTGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTTTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAACCATTTGCATGATCCTCTGAACAAGGGTCATACACCACTATCTTGGATTATGAGACTCCAAATTGCTTTGGACGCTGCGAGGGGTCTTGAATACATTCACGAGCATACTAAAACTCATTATGTTCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACGAAAGTTGTTGGCACATACGGCTATTTGGCTCCTGAATATTTGAGTAACGGTCTTGCGACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAAAAATCCTGAAAGACGTTCACTAGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCTATGAATATGGCAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATTCAATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTATCACAGATCCTACTCTCTTCGATTGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 2013 42.37 MFWSMNPVRIRSLFFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGHVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYVPLNSVPGDPYPLETDISPAPTPAPSYTQNNFSDNAQNPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPGGKVSHKFHILRKSSFCCASGRYICCSSADWKQANGESTDNQSAIPKAIESNVFDVDKPVVFSCEEIFSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKNHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28396657 28401128 - CmPI595203_07g013110.1 Cmu07g1311 420862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1311 670 FunFam Kinase family protein 335 431 - -
Cmu07g1311 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1311 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Cmu07g1311 670 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1311 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cmu07g1311 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Cmu07g1311 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Cmu07g1311 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Cmu07g1311 670 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1311 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Cmu07g1311 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Cmu07g1311 670 Pfam LysM domain 161 196 IPR018392 -
Cmu07g1311 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 659 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cmu07g1311 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1311 670 SMART LysM_2 158 202 IPR018392 -
Cmu07g1311 670 Gene3D LysM domain 156 202 IPR036779 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2165 Cmu-Chr5:31140349 Cmu07g1311 Cmu-Chr7:28396657 2.30E-37 dispersed
Cmu05g2611 Cmu-Chr5:34767071 Cmu07g1311 Cmu-Chr7:28396657 1.00E-99 dispersed
Cmu07g1311 Cmu-Chr7:28396657 Cmu07g0206 Cmu-Chr7:1962706 1.70E-55 dispersed
Cmu07g1311 Cmu-Chr7:28396657 Cmu05g2378 Cmu-Chr5:33008169 2.20E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75673 PF07714 PK_Tyr_Ser-Thr 1.30E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1311 - - - 0.0