Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1343 ATGGCAATGGAGGGAAAGCAGAAGTTCTTCCATGGAACGCTTGAAGTTACCATCTTCCATGCAACGGCTTACACCCCGCCATCACCTTTGGATTGCATATTTGCTGGAGGAAAGCGTAGCTATGTGACCATCAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGCGCACATCCATTGACTTCTACTGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCTACATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGATGAGTCCGGAGCTCAAACTTCGATTCATGCTATGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTTACTCTGTATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAAAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACAGATATACCCTATGCTTTAGGAGTAACGCTTGGAGAGTTGTTGAAGCAGAAGGCAGAAGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCCCTTCCTATCATTAAGAATGCTGGGATAATGAACACACATGATGAAGATGCTCGCGCATATTTCTTGCACTCAAAAGTCATATGTAGATTGTGCCCCAAATTACATCCTATGTCTCCCCCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTAGATCTTTGTGATGGTCGCTACGATACAGAACAACACTCACTGTTTCATACTTTGAACACAGAATCCCACTGTTGTGATTTCTATCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCATGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTTGTTGTTAGTACCGACAAGCATCTTATCAAAATTGATGCCCCAGCTCGAATCGAACACAAGCCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACTATTTGTCTGCTGGCCAAATGTTCAGAAACATGACCATTGAACGAACCATCCATGAAGCTTACGTTGAAGCTATCAGGCGAGCCGAGAGATTTATTTACATTGAAAACCAATATTTTATAGGAGGGTGTCACTTGTGGGACAAAGATCAACATTGTGGATGCACGAATTTGATACCGATTGAGATTGCGCTCAAGGTGGCTAATAAGATTAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCTCCAGAGAGTGAATCAGTTCAGGATATGCTACACTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGCCCATCCAAGAGATTACCTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGGGAAAGTGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATTGGATCCGCAAACGTAAACCAGAGATCCATGGACGGAGAGAGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAATGATGGAAAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACACGAAGATTCGAAGAACTGTTCTTAAACCCCGAAAGCTTGCAATGCGTTCAAAGGGTTTGTTCAATAGGAGATAAATCGTGGAAAATTTACAGTGGAGAAGAAGTTGAAGACATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAGGATGGGTCGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACCAAATGCCCCATTAAAGGAAGAAGATCAATGATGTTGCCGCCCATTTTCACAACCTAG 2286 42.52 MAMEGKQKFFHGTLEVTIFHATAYTPPSPLDCIFAGGKRSYVTIKIDNKEVAQTSHEHDRVWNQTFRVLCAHPLTSTVTITMKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKMSPELKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPKRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVTLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDALLLVPTSILSKLMPQLESNTSPQKDWNVQVFRSIDYLSAGQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVQDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEEGKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGKELPNGRDISTFRLSLWYEHTRRFEELFLNPESLQCVQRVCSIGDKSWKIYSGEEVEDMKGVHLVTYPVKVKEDGSMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28723195 28725965 + CmPI595203_07g013430.1 Cmu07g1343 420894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1343 761 Pfam Phospholipase D Active site motif 608 633 IPR001736 GO:0003824(InterPro)
Cmu07g1343 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Cmu07g1343 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Cmu07g1343 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cmu07g1343 761 Pfam C2 domain 12 108 IPR000008 -
Cmu07g1343 761 Gene3D Endonuclease Chain A 448 652 - -
Cmu07g1343 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
Cmu07g1343 761 Gene3D C2 domain 2 131 IPR035892 -
Cmu07g1343 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Cmu07g1343 761 SUPERFAMILY Phospholipase D/nuclease 144 408 - -
Cmu07g1343 761 Gene3D Endonuclease Chain A 173 431 - -
Cmu07g1343 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cmu07g1343 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 124 IPR035892 -
Cmu07g1343 761 SUPERFAMILY Phospholipase D/nuclease 423 690 - -
Cmu07g1343 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1343 Cmu-Chr7:28723195 Cmu09g0265 Cmu-Chr9:2664199 1.90E-172 dispersed
Cmu07g1343 Cmu-Chr7:28723195 Cmu07g1245 Cmu-Chr7:27763065 7.70E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1343 K01115 - csv:101206396 1514.98