Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1367 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCGATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCAAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGATTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACAACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2046 44.38 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28966201 28975559 + CmPI595203_07g013670.1 Cmu07g1367 420918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1367 681 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cmu07g1367 681 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cmu07g1367 681 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 305 667 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cmu07g1367 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 681 IPR001650 -
Cmu07g1367 681 Pfam DEAD/DEAH box helicase 333 495 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu07g1367 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Cmu07g1367 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 509 IPR014001 -
Cmu07g1367 681 SMART h15plus2 111 176 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cmu07g1367 681 Gene3D - 8 86 - -
Cmu07g1367 681 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cmu07g1367 681 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmu07g1367 681 SMART ultradead3 327 524 IPR014001 -
Cmu07g1367 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 662 IPR027417 -
Cmu07g1367 681 Gene3D - 517 681 IPR027417 -
Cmu07g1367 681 FunFam Telomere repeat-binding factor 1 8 87 - -
Cmu07g1367 681 CDD DEADc_EIF4A 313 510 - -
Cmu07g1367 681 SMART helicmild6 561 642 IPR001650 -
Cmu07g1367 681 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cmu07g1367 681 FunFam Telomere repeat-binding factor 1 2 58 - -
Cmu07g1367 681 FunFam Eukaryotic initiation factor 4A-III 516 681 - -
Cmu07g1367 681 CDD SANT_TRF 6 56 - -
Cmu07g1367 681 Pfam Helicase conserved C-terminal domain 534 642 IPR001650 -
Cmu07g1367 681 SUPERFAMILY Winged helix DNA-binding domain 110 192 IPR036390 -
Cmu07g1367 681 Gene3D - 110 197 IPR036388 -
Cmu07g1367 681 Gene3D - 298 516 IPR027417 -
Cmu07g1367 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724(InterPro)
Cmu07g1367 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmu07g1367 681 CDD SF2_C_DEAD 521 651 - -
Cmu07g1367 681 FunFam Eukaryotic initiation factor 4A-II 296 515 - -
Cmu07g1367 681 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1710 Cmu-Chr1:30814810 Cmu07g1367 Cmu-Chr7:28966201 9.00E-15 dispersed
Cmu07g1367 Cmu-Chr7:28966201 Cmu10g1961 Cmu-Chr10:25254719 1.00E-140 dispersed
Cmu01g2424 Cmu-Chr1:36174029 Cmu07g1367 Cmu-Chr7:28966201 8.20E-25 transposed
Cmu05g0184 Cmu-Chr5:1575692 Cmu07g1367 Cmu-Chr7:28966201 6.60E-73 transposed
Cmu05g0631 Cmu-Chr5:5363294 Cmu07g1367 Cmu-Chr7:28966201 3.60E-49 transposed
Cmu05g1302 Cmu-Chr5:14776942 Cmu07g1367 Cmu-Chr7:28966201 2.80E-56 transposed
Cmu05g2553 Cmu-Chr5:34311533 Cmu07g1367 Cmu-Chr7:28966201 3.40E-12 transposed
Cmu06g1779 Cmu-Chr6:28826444 Cmu07g1367 Cmu-Chr7:28966201 1.60E-44 transposed
Cmu07g0267 Cmu-Chr7:2617391 Cmu07g1367 Cmu-Chr7:28966201 2.80E-45 transposed
Cmu07g1345 Cmu-Chr7:28738731 Cmu07g1367 Cmu-Chr7:28966201 1.10E-50 transposed
Cmu08g1268 Cmu-Chr8:25012389 Cmu07g1367 Cmu-Chr7:28966201 4.70E-63 transposed
Cmu09g0294 Cmu-Chr9:2850478 Cmu07g1367 Cmu-Chr7:28966201 8.50E-49 transposed
Cmu10g2163 Cmu-Chr10:27676220 Cmu07g1367 Cmu-Chr7:28966201 2.40E-48 transposed
Cmu11g1889 Cmu-Chr11:30916252 Cmu07g1367 Cmu-Chr7:28966201 4.00E-49 transposed
Cmu07g1367 Cmu-Chr7:28966201 Cmu09g0076 Cmu-Chr9:936001 8.60E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6571 PF00270 DEAD 1.10E-39 CL0023 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1367 K03257 - csv:101223055 817.379