Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g1382 | ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCTGCCGCCGCCGATGAACAACCCGACCACGCCGCTTTCCCGCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAGTAGTAATAATAATAATGATGATAAATACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCCAACAATAATAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAGCCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCATCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCAGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGATGGTACTCCCTCAACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCGTCCTCGCAACCTCTCTTGGCCATTACTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTTTGGTGTGACAATACTGCTACAGACGATAATAATCAGCACCACGAGAATGTAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCAAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGGTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCGCTATGGAACCAATGA | 1623 | 46.09 | MSNWLGFSLTPHLRIHDAAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNSSNNNNDDKYHYQADHQTHQSLIPNNNNGIYKSWLGPTPQNECRFQSLSLGMSPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAITGDGGAESHHELADVVWCDNTATDDNNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGGGGEYSQGYFSMQEEKYEDGNEEGDQNSRQVSVTLAHHHVPMFALWNQ | 540 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 29152551 | 29156283 | + | CmPI595203_07g013820.1 | Cmu07g1382 | 420933 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g1382 | 540 | CDD | AP2 | 208 | 277 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 108 | 442 | - | - | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 76 | 110 | - | - | |
| Cmu07g1382 | 540 | Gene3D | AP2/ERF domain | 208 | 277 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | Gene3D | AP2/ERF domain | 311 | 371 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | ProSiteProfiles | AP2/ERF domain profile. | 311 | 369 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | FunFam | AP2-like ethylene-responsive transcription factor | 310 | 371 | - | - | |
| Cmu07g1382 | 540 | SUPERFAMILY | DNA-binding domain | 310 | 371 | IPR016177 | GO:0003677(InterPro) | |
| Cmu07g1382 | 540 | ProSiteProfiles | AP2/ERF domain profile. | 209 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 396 | 417 | - | - | |
| Cmu07g1382 | 540 | CDD | AP2 | 310 | 371 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 150 | 184 | - | - | |
| Cmu07g1382 | 540 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 208 | 277 | - | - | |
| Cmu07g1382 | 540 | PRINTS | Ethylene responsive element binding protein signature | 351 | 371 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | PRINTS | Ethylene responsive element binding protein signature | 210 | 221 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 71 | 113 | - | - | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
| Cmu07g1382 | 540 | Pfam | AP2 domain | 312 | 361 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | Pfam | AP2 domain | 209 | 267 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | SMART | rav1_2 | 209 | 281 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | SMART | rav1_2 | 311 | 375 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu07g1382 | 540 | MobiDBLite | consensus disorder prediction | 392 | 417 | - | - | |
| Cmu07g1382 | 540 | SUPERFAMILY | DNA-binding domain | 208 | 277 | IPR016177 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g2070 | Cmu-Chr2:34359105 | Cmu07g1382 | Cmu-Chr7:29152551 | 4.70E-47 | dispersed | |
| Cmu04g0914 | Cmu-Chr4:23629755 | Cmu07g1382 | Cmu-Chr7:29152551 | 3.80E-45 | dispersed | |
| Cmu05g2703 | Cmu-Chr5:35529319 | Cmu07g1382 | Cmu-Chr7:29152551 | 1.40E-102 | dispersed | |
| Cmu07g1382 | Cmu-Chr7:29152551 | Cmu11g0801 | Cmu-Chr11:9496474 | 7.30E-94 | dispersed | |
| Cmu07g1382 | Cmu-Chr7:29152551 | Cmu08g1610 | Cmu-Chr8:27776424 | 6.60E-111 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6574 | PF00847 | AP2 | 4.20E-13 | CL0081 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g1382 | K09285 | - | csv:101205762 | 875.159 |