Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1401 ATGAAGAAGATAAAGGTGGAACCAGAACGACTAATTGGAGGGGGCGCAGAGAGTGAGACACAATCGATAGAGGATAGAGGTGGTCGTGCTCAGGCTCATGCTCATGTCGTTGTGCATGGCCTAGTTCGTGGAACTTGGAAGCGAGGAAGAAGTTTGAGAGTTTGGTCACGGGTGGTGCAAATAGACTTCATTGTGAAGGAAGAAGAAGATTCATTTAGTTATGCAAAGCTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCCCAACTCTTGCGAGCTCACCCACCATTCGTCCGGATTTCAACCCTTGTGTTGGGCTTTGCCCTTGATTTTGATCCCTTCAGATATTCCTTAATCTGCTTTGTAGAGCTTGGTGCTGGCCATATTTGTCCTGCCTGCCAGAGCTATAAAGAAACATTTTTCCCATTCTTAGAAAAGGGAAGAAGGGAAAGAGCAAGTGATTTTATCAATGGAGCTACGGATCCAGGAGATGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGGAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2589 44.03 MKKIKVEPERLIGGGAESETQSIEDRGGRAQAHAHVVVHGLVRGTWKRGRSLRVWSRVVQIDFIVKEEEDSFSYAKLFVKMPQRQTPLQSCRGAQLLRAHPPFVRISTLVLGFALDFDPFRYSLICFVELGAGHICPACQSYKETFFPFLEKGRRERASDFINGATDPGDVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29264052 29272408 + CmPI595203_07g014010.1 Cmu07g1401 420952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1401 862 Pfam Protein tyrosine and serine/threonine kinase 559 829 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1401 862 Gene3D Transferase(Phosphotransferase) domain 1 636 852 - -
Cmu07g1401 862 Gene3D Phosphorylase Kinase; domain 1 518 634 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 457 477 - -
Cmu07g1401 862 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 167 393 - -
Cmu07g1401 862 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 521 634 - -
Cmu07g1401 862 CDD STKc_IRAK 563 832 - -
Cmu07g1401 862 ProSiteProfiles Protein kinase domain profile. 557 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1401 862 Pfam Leucine rich repeat N-terminal domain 168 207 IPR013210 -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 847 862 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 381 406 - -
Cmu07g1401 862 SMART LRR_typ_2 279 302 IPR003591 -
Cmu07g1401 862 SMART LRR_typ_2 233 257 IPR003591 -
Cmu07g1401 862 SMART LRR_typ_2 303 326 IPR003591 -
Cmu07g1401 862 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 635 843 - -
Cmu07g1401 862 SUPERFAMILY L domain-like 166 372 - -
Cmu07g1401 862 PANTHER LEUCINE RICH REPEAT KINASE 2 433 831 IPR051420 -
Cmu07g1401 862 Pfam Leucine rich repeat 257 314 IPR001611 GO:0005515(InterPro)
Cmu07g1401 862 SUPERFAMILY Protein kinase-like (PK-like) 537 829 IPR011009 -
Cmu07g1401 862 Gene3D Ribonuclease Inhibitor 167 387 IPR032675 -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 503 526 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 840 862 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2223 Cmu-Chr1:34640195 Cmu07g1401 Cmu-Chr7:29264052 3.60E-97 dispersed
Cmu02g0127 Cmu-Chr2:1354939 Cmu07g1401 Cmu-Chr7:29264052 2.30E-105 dispersed
Cmu07g1401 Cmu-Chr7:29264052 Cmu07g1562 Cmu-Chr7:30833259 1.20E-69 dispersed
Cmu01g0940 Cmu-Chr1:12894479 Cmu07g1401 Cmu-Chr7:29264052 2.50E-150 transposed
Cmu08g0448 Cmu-Chr8:14837565 Cmu07g1401 Cmu-Chr7:29264052 2.60E-163 transposed
Cmu10g2475 Cmu-Chr10:31363250 Cmu07g1401 Cmu-Chr7:29264052 3.10E-103 transposed
Cmu07g1401 Cmu-Chr7:29264052 Cmu09g0141 Cmu-Chr9:1595205 4.30E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75683 PF07714 PK_Tyr_Ser-Thr 9.70E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1401 - - - 0.0