Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1401 ATGAAGAAGATAAAGGTGGAACCAGAACGACTAATTGGAGGGGGCGCAGAGAGTGAGACACAATCGATAGAGGATAGAGGTGGTCGTGCTCAGGCTCATGCTCATGTCGTTGTGCATGGCCTAGTTCGTGGAACTTGGAAGCGAGGAAGAAGTTTGAGAGTTTGGTCACGGGTGGTGCAAATAGACTTCATTGTGAAGGAAGAAGAAGATTCATTTAGTTATGCAAAGCTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCCCAACTCTTGCGAGCTCACCCACCATTCGTCCGGATTTCAACCCTTGTGTTGGGCTTTGCCCTTGATTTTGATCCCTTCAGATATTCCTTAATCTGCTTTGTAGAGCTTGGTGCTGGCCATATTTGTCCTGCCTGCCAGAGCTATAAAGAAACATTTTTCCCATTCTTAGAAAAGGGAAGAAGGGAAAGAGCAAGTGATTTTATCAATGGAGCTACGGATCCAGGAGATGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGGAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2589 44.03 MKKIKVEPERLIGGGAESETQSIEDRGGRAQAHAHVVVHGLVRGTWKRGRSLRVWSRVVQIDFIVKEEEDSFSYAKLFVKMPQRQTPLQSCRGAQLLRAHPPFVRISTLVLGFALDFDPFRYSLICFVELGAGHICPACQSYKETFFPFLEKGRRERASDFINGATDPGDVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29264052 29272408 + CmPI595203_07g014010.1 Cmu07g1401 420952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1401 862 Pfam Protein tyrosine and serine/threonine kinase 559 829 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu07g1401 862 Gene3D Transferase(Phosphotransferase) domain 1 636 852 - -
Cmu07g1401 862 Gene3D Phosphorylase Kinase; domain 1 518 634 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 457 477 - -
Cmu07g1401 862 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 167 393 - -
Cmu07g1401 862 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 521 634 - -
Cmu07g1401 862 CDD STKc_IRAK 563 832 - -
Cmu07g1401 862 ProSiteProfiles Protein kinase domain profile. 557 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu07g1401 862 Pfam Leucine rich repeat N-terminal domain 168 207 IPR013210 -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 847 862 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 381 406 - -
Cmu07g1401 862 SMART LRR_typ_2 279 302 IPR003591 -
Cmu07g1401 862 SMART LRR_typ_2 233 257 IPR003591 -
Cmu07g1401 862 SMART LRR_typ_2 303 326 IPR003591 -
Cmu07g1401 862 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 635 843 - -
Cmu07g1401 862 SUPERFAMILY L domain-like 166 372 - -
Cmu07g1401 862 PANTHER LEUCINE RICH REPEAT KINASE 2 433 831 IPR051420 -
Cmu07g1401 862 Pfam Leucine rich repeat 257 314 IPR001611 GO:0005515(InterPro)
Cmu07g1401 862 SUPERFAMILY Protein kinase-like (PK-like) 537 829 IPR011009 -
Cmu07g1401 862 Gene3D Ribonuclease Inhibitor 167 387 IPR032675 -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 503 526 - -
Cmu07g1401 862 MobiDBLite consensus disorder prediction 840 862 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1401 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2223 Cmu-Chr1:34640195 Cmu07g1401 Cmu-Chr7:29264052 3.60E-97 dispersed
Cmu02g0127 Cmu-Chr2:1354939 Cmu07g1401 Cmu-Chr7:29264052 2.30E-105 dispersed
Cmu07g1401 Cmu-Chr7:29264052 Cmu07g1562 Cmu-Chr7:30833259 1.20E-69 dispersed
Cmu01g0940 Cmu-Chr1:12894479 Cmu07g1401 Cmu-Chr7:29264052 2.50E-150 transposed
Cmu08g0448 Cmu-Chr8:14837565 Cmu07g1401 Cmu-Chr7:29264052 2.60E-163 transposed
Cmu10g2475 Cmu-Chr10:31363250 Cmu07g1401 Cmu-Chr7:29264052 3.10E-103 transposed
Cmu07g1401 Cmu-Chr7:29264052 Cmu09g0141 Cmu-Chr9:1595205 4.30E-205 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu01g0940 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu07g1401 . 161 855 Strubbelig Receptor Gene Family AT1G53730 60.3 4.1e-201 698.4
Cmu09g0141 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 5.8e-187 651.4
Cmu08g0448 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cmu01g0940 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.5e-147 518.8
Cmu07g1401 . 161 850 Strubbelig Receptor Gene Family AT3G14350 56.8 1.5e-179 626.7
Cmu09g0141 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.6 2.6e-168 589.3
Cmu01g0940 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Cmu07g1401 . 534 862 Strubbelig Receptor Gene Family AT4G22130 63.4 4.8e-120 428.7
Cmu09g0141 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 2.9e-117 419.5
Cmu02g0127 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Cmu08g0448 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cmu10g2475 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.4e-92 334.7
Cmu01g2223 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.4e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75683 PF07714 PK_Tyr_Ser-Thr 9.70E-41 CL0016 Cmu PK