Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1407 ATGGCACAAACCGACGACTGCGCCGTCACCGGATTTTTGTTCTCCGGCAGCCCCATTTCCATTTCCAACATAAAAATCAAGCTGTTGGTGTTAGCCGTGTGGGCTGCGCTTGTCCTGACGGGCGTCTCCTCCGACGAGCACGTGAGAAGCACGTGCGCCATGACGCTTTACCCGGAGCTTTGCGAGACGACGATATCGAGCGGAGTGGGAAGTAAGAGTTCAAAAGAGGCAATCGAATCGTCGGTGAATATTACGATTGGCGCAGTGAAGGATAACTATAAAAGGATCAAGAAATTGGTTAAGACAGGAAAGAATCTGAGAAAGCGAGAGAAGATTGCTCTCAATGACTGTCTAGAAACAGGGGAGGAGACGCTGAGAGAGCTGTATGAGGTTGTTGATGATCTCCATGAATATCCTAATAAGAAATCTCTCTCACAATACGCCGATGACCTCAAAACCTTCCTCAGTTCCGCCATTACGAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGCCGACAAGAAGGTACGAGAGTCATTAGAAGCAGGCCTAATTCACGTCGAAAAGCTTTGTAGCGTTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACGACAACCTCATCAATAGAAACCAGCTCACGGAGATCAACAATGGACGCGACCACGACGGAATTAACTGGCCCCATTGGATGTCGCCTGGCGACCGAAGGCTTTTGCAGGCGTCGTCCACCGCCACTCCCGATGTGGTAGTGGCAGCCGATGGAAGTGGCAATTTCCGAACGGTGTCGGAGGCGGTTGCGGCGGCGCCGAATAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACCGGGAACAGAAATGTCGTCGATGGCAGTACCACCTTCAACTCCGCCACCGTCGCGGCAGTGGGAGAAAGGTTCTTGGCGAGAGACATTACGTTTCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCTTATCAAGACACACTCTACGTCCACTCCAACCGCCAATTCTACGTCAAATGCATAATCATTGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTGCGACATCCACGCTCGCCGCCCCAATCCCGGGCAGAGGAACATGGTGACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGTCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGTAATTTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGCATTAGCAATGTGATCGATCCGGCAGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTACGCCGAGTATCAGAATAGCGGGCCCGGTGCTGATACGTCAAGGAGAGTAACGTGGAAGGGGTATAGGGTTCTTACAAGTGCGGCGGAAGCTGCGGCCTTCACGGCAGGGAATTTCATCGGCGGCGGCACCTGGCTGAGATCCACTGGATTCCCATTTTCACTTGGGCTGTAA 1704 51.7 MAQTDDCAVTGFLFSGSPISISNIKIKLLVLAVWAALVLTGVSSDEHVRSTCAMTLYPELCETTISSGVGSKSSKEAIESSVNITIGAVKDNYKRIKKLVKTGKNLRKREKIALNDCLETGEETLRELYEVVDDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSVALALIKNLTDTDIANHNDNLINRNQLTEINNGRDHDGINWPHWMSPGDRRLLQASSTATPDVVVAADGSGNFRTVSEAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAAAFTAGNFIGGGTWLRSTGFPFSLGL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29305664 29309163 + CmPI595203_07g014070.1 Cmu07g1407 420958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1407 567 FunFam Pectinesterase 44 204 - -
Cmu07g1407 567 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Cmu07g1407 567 CDD PMEI-like_3 50 204 - -
Cmu07g1407 567 NCBIfam pectinesterase inhibitor domain 31 204 IPR006501 GO:0004857(InterPro)
Cmu07g1407 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Cmu07g1407 567 PANTHER PECTINESTERASE 28 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu07g1407 567 Gene3D - 250 567 IPR012334 -
Cmu07g1407 567 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Cmu07g1407 567 SMART PMEI_2 43 199 IPR006501 GO:0004857(InterPro)
Cmu07g1407 567 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857(InterPro)
Cmu07g1407 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Cmu07g1407 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Cmu07g1407 567 FunFam Pectinesterase 250 567 - -
Cmu07g1407 567 Pfam Pectinesterase 256 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1407 Cmu-Chr7:29305664 Cmu09g0534 Cmu-Chr9:4907670 2.70E-131 dispersed
Cmu07g1407 Cmu-Chr7:29305664 Cmu07g1408 Cmu-Chr7:29314194 5.50E-100 tandem
Cmu09g0840 Cmu-Chr9:8206021 Cmu07g1407 Cmu-Chr7:29305664 1.30E-179 transposed
Cmu07g1407 Cmu-Chr7:29305664 Cmu09g0137 Cmu-Chr9:1534782 1.40E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1407 K01051 - csv:101207996 934.48