Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1525 ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACTGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCGACAGACGACATGTCGTTCGATGCGACGAGTAGAATGAAGGACGACGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACAACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 588 44.73 MVFSRASQLVEMQRGDCFTQPPPVSGGFPLFRDVPTDDMSFDATSRMKDDDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 195
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 30462554 30466777 + CmPI595203_07g015250.1 Cmu07g1525 421076
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1525 195 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g1525 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 176 IPR044810 GO:0003700(InterPro)
Cmu07g1525 195 FunFam WRKY transcription factor 57 102 176 - -
Cmu07g1525 195 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g1525 195 SMART WRKY_cls 116 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g1525 195 Gene3D WRKY domain 101 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu07g1525 195 SUPERFAMILY WRKY DNA-binding domain 108 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0140 Cmu-Chr5:1229727 Cmu07g1525 Cmu-Chr7:30462554 1.50E-27 dispersed
Cmu05g1427 Cmu-Chr5:18865943 Cmu07g1525 Cmu-Chr7:30462554 2.30E-46 dispersed
Cmu07g1525 Cmu-Chr7:30462554 Cmu11g0779 Cmu-Chr11:8329010 2.50E-44 dispersed
Cmu07g1525 Cmu-Chr7:30462554 Cmu07g0787 Cmu-Chr7:19914567 2.10E-30 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6585 PF03106 WRKY 9.60E-26 CL0274 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1525 - - - 0.0