Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1553 ATGGAAAATGGAAGGGAATCTGATATTCTCTTCATCTGCAAGGAATTATCGATCGGAGGATCGAATTTCGATCCCCCAAAGCTCCCCGCAGCCTGTGTTTTTTCTTCTGAGGACCTTGTTAGGTATGATTGTGGCCTTCTTTTCGTCGTTGATGAATGTGTTTGTGGTGCTGCAGCGATGGCTAGATCTTTTTTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCTCCTCTCCGAGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCTCTTGTTACCGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCGACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCACTAACAGCTTTACAGGAGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCGAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACAAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTCCAATTTTATTATCGGAGCCTGACCCGTCAGCAAGCTCAACAACAAGCATGGCTTCAGAAAAGAAGGGCTGAGAACATGATGAGGAAGGCAGCAGGAGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTATTGCAATCAAATTAATGGTTCTGAGCTTCTTGTTTTAGATCTGAATTTCTCCCTTGAAAAATCAGATGCGGAGCAGGGAGAAGAAGGAAAGGAAGTTTGTGAGCACTTGTCTGCCCGGCTTTGTTGA 1230 43.5 MENGRESDILFICKELSIGGSNFDPPKLPAACVFSSEDLVRYDCGLLFVVDECVCGAAAMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGSELLVLDLNFSLEKSDAEQGEEGKEVCEHLSARLC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30746941 30754907 + CmPI595203_07g015530.1 Cmu07g1553 421104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1553 409 Pfam C-terminal region of eIF3h 198 373 IPR045810 -
Cmu07g1553 409 FunFam Eukaryotic translation initiation factor 3 subunit H 59 268 - -
Cmu07g1553 409 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 77 182 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cmu07g1553 409 Gene3D Cytidine Deaminase, domain 2 50 269 - -
Cmu07g1553 409 CDD MPN_eIF3h 78 341 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cmu07g1553 409 SMART pad1_6 79 212 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cmu07g1553 409 ProSiteProfiles MPN domain profile. 80 213 IPR037518 -
Cmu07g1553 409 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 75 392 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cmu07g1553 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 63 331 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1553 K03247 - csv:101211860 624.394