Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu07g1620 | ATGAGGAGAGGGAGTTTAAAAACCACTCTACATTTGGCAGAGGTCCCAGCCTCCATCTCCTTCTCCAGTTCTCTCGCACTTTCTCCTTCTCTTTCTCAGCACAACACCTTTCTCCTTCTCTTCATCTTCACTTCGTTTTCGGCTCCCACTTCCATCTTCCATCTCAGGCTCCCACTCCCATCTCCGATTCGCACCTCAGTCAGCCACCGGCACCGCCATCTTCCGTCTCACTCAGACAATAAGGAAGGAATGGGTGCTCAGAGAAAGGGAGCATCGCGGGTCTCCGAGGACCCCGAGGAGCTGGCACGAGTTTCGTTGCAGGCTGTTCTCCTTGCCGATAGCTTTACTACTAAGTTTCGCCCCATTACGCTTGAACGCCCCAAGGTATTACTGCCGCTCGTAAATGTGCCGATGATTAATTATACCTTATCTTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGATGCCTTGCGTTTGATCTACGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACTCACCAATCTCGGCTTGGCACCGACGAACTATTTATGGCAATTGATCACAATACTAAGCAACTCTTGTACTATGAGGATAAGGTTGACCATTCAAAAGGAATTATACATCTAGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTTTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTGAAGGGCTTGCTCTTAGATGATATCATGGGTTACAAGATTTATACACATGAAATTTGCTCAAGCTATGCAGCTAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCTGATGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGATATACTGCAGGCACGCTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGGTAACACCAAAATTACGAATTCAATTATTGGGCAAGGGTGTAATATTGGATCAAATGTTACAATTGAAGGCTCTTACATATGGGACAATGTGACCATTGAAGATGGCTGTAAACTCAGTCATGCTATCGTATGTGATGGAGTTGTCATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTGGGGGATCAATTTACCGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAACCAATCAAGATAGTGATGAGGAGCTGGAATATGCAGATAATAGCAGTGGCATTGTAGAATTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGCAAGGGAGGTCTAGGACATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAAACTTGAGAAGGTTCTGCATAAAGCAACAGATGATGAGCTGGAGTCAACTCAAGATGCTAATATTTTACCACCTTCAGGGGAGTTGAAGTCCGACTCATACGTCTCAGATGGTGATGATAATGAAAGCTCTAGAGATGACTCCTTCCACTTTGAGAAAGAGGTTGAAGCAACATTTCTGAGGGCTGTGCATGAAAATATTGAAGTAGCCAATGTAATTTTGGAAGTGAATTCATTGCGGTTGTCATATAATAAGGTAGCTTCAGATTGTGCAGGAGCAATATTTTATTCTCTGATGAACTTTGCCTTAGATGCTCCACATGGTTCATCTAGTGAACTACTGCAAAATACTACAAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACCTAACCGACTTGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCATCTATATGACCAAGAAATCATTCAAGAAGAGGCTATTCTGAAGTGGGATGCTGAGAAAAAGGAAGCGGATGATTCAGATAAGCTTTTCGTGAAGCAGGCCGAAAAATTCATTGAATGGTTAAAAGTTGCACCAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAAGAGGATGAATAG | 2457 | 42.04 | MRRGSLKTTLHLAEVPASISFSSSLALSPSLSQHNTFLLLFIFTSFSAPTSIFHLRLPLPSPIRTSVSHRHRHLPSHSDNKEGMGAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLLYYEDKVDHSKGIIHLDKSLLMDNPSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASDILQARSAQVGPFTVIGDNSKIGGNTKITNSIIGQGCNIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSKSLEMQGWPASELGKGGLGHVWSICEGSVEEEWRHSVAPIPADKLEKVLHKATDDELESTQDANILPPSGELKSDSYVSDGDDNESSRDDSFHFEKEVEATFLRAVHENIEVANVILEVNSLRLSYNKVASDCAGAIFYSLMNFALDAPHGSSSELLQNTTNIITKWKKLLKYYLTDLDEEIEVILKFEEICLESAKEFTPHFTKILWHLYDQEIIQEEAILKWDAEKKEADDSDKLFVKQAEKFIEWLKVAPEEEEEEEEEEEDE | 818 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 31411248 | 31427080 | - | CmPI595203_07g016200.1 | Cmu07g1620 | 421171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu07g1620 | 818 | MobiDBLite | consensus disorder prediction | 68 | 97 | - | - | |
| Cmu07g1620 | 818 | CDD | LbH_eIF2B_epsilon | 424 | 502 | - | - | |
| Cmu07g1620 | 818 | Gene3D | Hexapeptide repeat proteins | 403 | 512 | - | - | |
| Cmu07g1620 | 818 | MobiDBLite | consensus disorder prediction | 606 | 642 | - | - | |
| Cmu07g1620 | 818 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 94 | 815 | IPR051956 | GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0031369(PANTHER) | |
| Cmu07g1620 | 818 | MobiDBLite | consensus disorder prediction | 72 | 97 | - | - | |
| Cmu07g1620 | 818 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 732 | 811 | IPR003307 | GO:0005515(InterPro) | |
| Cmu07g1620 | 818 | FunFam | Translation initiation factor eIF-2B epsilon subunit | 636 | 815 | - | - | |
| Cmu07g1620 | 818 | Gene3D | - | 634 | 817 | - | - | |
| Cmu07g1620 | 818 | ProSiteProfiles | W2 domain profile. | 640 | 811 | IPR003307 | GO:0005515(InterPro) | |
| Cmu07g1620 | 818 | SUPERFAMILY | ARM repeat | 646 | 802 | IPR016024 | - | |
| Cmu07g1620 | 818 | Pfam | Nucleotidyl transferase | 108 | 251 | IPR005835 | GO:0009058(InterPro) | |
| Cmu07g1620 | 818 | Pfam | Bacterial transferase hexapeptide (six repeats) | 423 | 456 | IPR001451 | - | |
| Cmu07g1620 | 818 | SMART | 542_3 | 720 | 807 | IPR003307 | GO:0005515(InterPro) | |
| Cmu07g1620 | 818 | MobiDBLite | consensus disorder prediction | 628 | 642 | - | - | |
| Cmu07g1620 | 818 | CDD | eIF-2B_epsilon_N | 106 | 322 | IPR035543 | - | |
| Cmu07g1620 | 818 | SUPERFAMILY | Trimeric LpxA-like enzymes | 350 | 512 | IPR011004 | - | |
| Cmu07g1620 | 818 | FunFam | Trimeric LpxA-like enzyme | 399 | 532 | - | - | |
| Cmu07g1620 | 818 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 94 | 386 | IPR029044 | - | |
| Cmu07g1620 | 818 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 105 | 452 | IPR029044 | - | |
| Cmu07g1620 | 818 | FunFam | Translation initiation factor eIF-2B subunit epsilon | 95 | 386 | - | - | |
| Cmu07g1620 | 818 | CDD | W2_eIF2B_epsilon | 641 | 802 | IPR044123 | GO:0005085(InterPro)|GO:0031369(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu07g1620 | K03240 | - | csv:101217025 | 1355.5 |