Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1621 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACTGTGCACCACCCGCATAGATCAGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCAAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCGACATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 936 43.7 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVKDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31436716 31438226 - CmPI595203_07g016210.1 Cmu07g1621 421172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1621 311 MobiDBLite consensus disorder prediction 160 185 - -
Cmu07g1621 311 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cmu07g1621 311 MobiDBLite consensus disorder prediction 203 230 - -
Cmu07g1621 311 MobiDBLite consensus disorder prediction 1 16 - -
Cmu07g1621 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 277 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cmu07g1621 311 MobiDBLite consensus disorder prediction 168 185 - -
Cmu07g1621 311 Pfam TCP family transcription factor 60 175 IPR017887 -
Cmu07g1621 311 MobiDBLite consensus disorder prediction 289 311 - -
Cmu07g1621 311 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1621 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2415 Cmu-Chr1:36124161 Cmu07g1621 Cmu-Chr7:31436716 4.90E-25 dispersed
Cmu03g1267 Cmu-Chr3:7595355 Cmu07g1621 Cmu-Chr7:31436716 4.10E-24 dispersed
Cmu04g1211 Cmu-Chr4:26648504 Cmu07g1621 Cmu-Chr7:31436716 5.80E-31 dispersed
Cmu06g1607 Cmu-Chr6:27291453 Cmu07g1621 Cmu-Chr7:31436716 1.30E-33 dispersed
Cmu07g1621 Cmu-Chr7:31436716 Cmu11g1760 Cmu-Chr11:29736171 1.50E-19 dispersed
Cmu11g0546 Cmu-Chr11:5959838 Cmu07g1621 Cmu-Chr7:31436716 1.80E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0791 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cmu02g1408 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cmu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cmu05g2494 . 64 158 TCP Transcription Factor Family AT3G47620 89.7 8.6e-41 165.2
Cmu04g1279 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cmu11g1349 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cmu11g1349 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cmu05g1438 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cmu02g1408 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cmu01g0791 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.7e-63 237.3
Cmu11g1349 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Cmu07g1621 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6595 PF03634 TCP 1.00E-27 No_clan Cmu TF