Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1641 ATGGCCTCCGCCCACGGCGGCGCCGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTCCTGACCACGGCGGTCGATTCCGTGATTGGAAGTCGGCAACCGGACTCCGCCGCCACGCTCCGGGGGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAGTCGTCAAGGAAGGTAGTTCAGTCGTCGTCTACTTCCAACGATCTGAAATCATCGTCGTCCACCGCCGCCGCCTTGCATAGGTCATACGGAATCAACGATTTGGCGTTAGGGGATTTCTCGACGGGTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTTGCCGAACCAAACGGAGGGTTTTCATTGACAATGGGAGGTGTTGGAAATGGAGTAGGAAGACTAAAGTCTCAAATGAGCTTCAGTGGGCAGGATAATTCACTTTCCCAAATCTCTGAAATGAGTGAAAGTTTTGTGGAGGCAGCCAATTCCTCAAGCAATGGCCTTCAAAGCAACACCAATTCCACACATTCTTTTGGCCCCTCTGCCTTTGCTATGGACTCTTCATGGGACACCTCCAATAATTCCATTGTCTTTGGTGGCCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCCGACTTCTTCACTGGCCTCGAGTCTCAATTTAGCCTGCCACAAACAACTCTAGAAATGGCAGCTGTGGAGAGGTTGCTTCAAATTCCTGAAGATGCTGTTCCTTGTAAGATTCGAGCCAAGCGTGGCTGTGCTACTCACCCTCGGAGTATTGCCGAACGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTGGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA 1047 50.62 MASAHGGAGLTRYGSAPGSLLTTAVDSVIGSRQPDSAATLRGPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTAAALHRSYGINDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTMGGVGNGVGRLKSQMSFSGQDNSLSQISEMSESFVEAANSSSNGLQSNTNSTHSFGPSAFAMDSSWDTSNNSIVFGGPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDAVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31708953 31716034 - CmPI595203_07g016410.1 Cmu07g1641 421192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1641 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 335 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu07g1641 348 SMART finulus 282 332 IPR011598 GO:0046983(InterPro)
Cmu07g1641 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 326 IPR011598 GO:0046983(InterPro)
Cmu07g1641 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 340 IPR036638 GO:0046983(InterPro)
Cmu07g1641 348 CDD bHLH_AtbHLH_like 281 333 IPR045239 -
Cmu07g1641 348 Pfam Helix-loop-helix DNA-binding domain 282 327 IPR011598 GO:0046983(InterPro)
Cmu07g1641 348 Gene3D - 277 345 IPR036638 GO:0046983(InterPro)
Cmu07g1641 348 Coils Coil 316 343 - -
Cmu07g1641 348 FunFam Transcription factor bHLH130 family 277 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1641 Cmu-Chr7:31708953 Cmu08g0457 Cmu-Chr8:15218539 4.00E-08 dispersed
Cmu03g1946 Cmu-Chr3:27068468 Cmu07g1641 Cmu-Chr7:31708953 7.80E-32 transposed
Cmu08g0039 Cmu-Chr8:916345 Cmu07g1641 Cmu-Chr7:31708953 4.20E-25 transposed
Cmu09g0415 Cmu-Chr9:3953223 Cmu07g1641 Cmu-Chr7:31708953 1.40E-32 transposed
Cmu10g2467 Cmu-Chr10:31287112 Cmu07g1641 Cmu-Chr7:31708953 6.30E-36 transposed
Cmu03g2230 Cmu-Chr3:30934821 Cmu07g1641 Cmu-Chr7:31708953 1.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6597 PF00010 HLH 9.10E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1641 - - - 0.0