Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1646 ATGGCTGATTCCCGAGCTCTTCCTCTTCGTTGCGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAGAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGCGCTATACTGACTGCTTTATGTGTGGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCAATGTTGTATTGCAAAATACTGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCTATTGTTTTGAAGGATTCTCATGGGAAAAAAGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATTTACTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCGCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATCGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGGAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACACAGGCCGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGACTGAAGATGCTAAGTCAACAGTCATGAGGTTGAAAGAGGAGGAAAATGCCTTAATGGAAAGTCTATACAGTGGGAGAAATGAAATAAAAAAGATTGCTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGAAGGTTGCTCAATGCTTTCATTGTGACGGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCGGTGTTAAATATTCCAGATCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCACACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCATTTGACCAACGTATATCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATATATGCATTATCTTCCAGTTCCAAAAAGGAGGAGAATCTCTTTTACCAGCTGAATCCCATTTTGCCTAAAAATCTCTTCAGGTTTTCTCGAGGTTCCGTCCAGACAATTCTTCCCCCAGTTAGAAGACCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAGAGATGCATTTAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAGCAATGCAAAGAGGAAGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGTTCATTGCCTTCATCAAATGTGGACGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAATTTGCTTTTGGAAAAGTTTAAAATTAGGATGAAAGAAGCGGAAGCCAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTCTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGAGCTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGCGCCATCGTAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTGGGTGATTGGGATGGGAGCACACCTGAACAACTGAGTGCACAATTAACAAGGCTAAATCAGAGACTGAATAATGAGACTCGACGATGTTCTGAATCTTTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATCATAAGAAAACAACAGACTTATAAAAGTTTTAGGGAGAAGTTGGATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAATAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAGGGGATCAGCGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTATGCTTTGCATTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTCGATGTGTTTATGGATGCAGTAAGCCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATAGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3240 40.4 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVINVVLQNTGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQGTLSLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELESETEDAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIIIYDFSRPVLNIPDHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKIYALSSSSKKEENLFYQLNPILPKNLFRFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLERDAFNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRKCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENNLLLEKFKIRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLDACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGIVKQGERIKKQQMAAPRS 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31796156 31809034 - CmPI595203_07g016460.1 Cmu07g1646 421197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1646 1079 Coils Coil 362 396 - -
Cmu07g1646 1079 Coils Coil 189 223 - -
Cmu07g1646 1079 Coils Coil 312 332 - -
Cmu07g1646 1079 Coils Coil 340 360 - -
Cmu07g1646 1079 Coils Coil 737 820 - -
Cmu07g1646 1079 Coils Coil 822 849 - -
Cmu07g1646 1079 Gene3D - 856 1074 IPR027417 -
Cmu07g1646 1079 SUPERFAMILY Smc hinge domain 423 604 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Cmu07g1646 1079 Gene3D - 15 272 IPR027417 -
Cmu07g1646 1079 Coils Coil 655 710 - -
Cmu07g1646 1079 Coils Coil 284 304 - -
Cmu07g1646 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1069 IPR027417 -
Cmu07g1646 1079 Coils Coil 877 915 - -
Cmu07g1646 1079 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1077 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Cmu07g1646 1079 Pfam RecF/RecN/SMC N terminal domain 16 1069 IPR003395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1646 Cmu-Chr7:31796156 Cmu09g0424 Cmu-Chr9:3992571 9.10E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1646 K22804 - csv:101208493 1925.6