Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu07g1670 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGATACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGTGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGCGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATCGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 648 55.09 MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPDTKQKFNLNAHRLRVAVSTVECLPEEKIDGVSEIPVRENGGGRGNRSFGLEVSELDSPHIDWISELLQ 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32037698 32038345 - CmPI595203_07g016700.1 Cmu07g1670 421221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu07g1670 215 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
Cmu07g1670 215 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
Cmu07g1670 215 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Cmu07g1670 215 PANTHER UNKEMPT FAMILY MEMBER 36 150 IPR045234 -
Cmu07g1670 215 Gene3D - 81 154 - -
Cmu07g1670 215 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Cmu07g1670 215 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1670 Cmu-Chr7:32037698 Cmu11g0187 Cmu-Chr11:2306146 5.10E-46 dispersed
Cmu03g2183 Cmu-Chr3:30337099 Cmu07g1670 Cmu-Chr7:32037698 3.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6601 PF00642 zf-CCCH 1.20E-05 CL0537 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu07g1670 - - - 0.0